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    LOC551458 leucine-rich repeat-containing protein 20 [ Apis mellifera (honey bee) ]

    Gene ID: 551458, updated on 9-Nov-2023

    Summary

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    Gene symbol
    LOC551458
    Gene description
    leucine-rich repeat-containing protein 20
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Apis mellifera
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Apoidea; Anthophila; Apidae; Apis
    Also known as
    GB49110
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    Genomic context

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    Location:
    chromosome: LG3
    Exon count:
    5
    Annotation release Status Assembly LG Location
    104 current Amel_HAv3.1 (GCF_003254395.2) LG3 NC_037640.1 (3288118..3295009, complement)
    103 previous assembly Amel_4.5 (GCF_000002195.4) LG3 NC_007072.3 (1714534..1721423)

    Linkage Group LG3 - NC_037640.1Genomic Context describing neighboring genes Neighboring gene folylpolyglutamate synthase, mitochondrial Neighboring gene neuropathy target esterase sws Neighboring gene formin-binding protein 1-like Neighboring gene uncharacterized LOC102654823 Neighboring gene uncharacterized LOC102655152 Neighboring gene uncharacterized LOC102655173 Neighboring gene PDZ domain-containing protein 8

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Differential expression of endogenous plant cell wall degrading enzyme genes in the stick insect (Phasmatodea) midgut. Shelomi M, et al. BMC Genomics, 2014 Oct 21. PMID 25331961, Free PMC Article
    2. Insights into social insects from the genome of the honeybee Apis mellifera. Honeybee Genome Sequencing Consortium. Nature, 2006 Oct 26. PMID 17073008, Free PMC Article
    3. ProtoBee: hierarchical classification and annotation of the honey bee proteome. Kaplan N, et al. Genome Res, 2006 Nov. PMID 17065614, Free PMC Article
    4. Finding the missing honey bee genes: lessons learned from a genome upgrade. Elsik CG, et al. BMC Genomics, 2014 Jan 30. PMID 24479613, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    leucine-rich repeat-containing protein 20

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Apis mellifera Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Amel_HAv3.1 Primary Assembly

    Genomic

    1. NC_037640.1 Reference Amel_HAv3.1 Primary Assembly

      Range
      3288118..3295009 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_623850.6 → XP_623853.1  leucine-rich repeat-containing protein 20 isoform X2

      UniProtKB/TrEMBL
      A0A7M7R7K1, A0A8B9B423
      Conserved Domains (2) summary
      COG4886
      Location:52 → 194
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      sd00033
      Location:52 → 74
      LRR_RI; leucine-rich repeat [structural motif]

    2. XM_006558403.3 → XP_006558466.2  leucine-rich repeat-containing protein 20 isoform X1

      UniProtKB/TrEMBL
      A0A7M7GJX5, A0A8B6YRU1
    Nucleotide Protein Strain
    Heading Accession and Version

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