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    Khdc4 KH domain containing 4, pre-mRNA splicing factor [ Mus musculus (house mouse) ]

    Gene ID: 74200, updated on 31-Jan-2019

    Summary

    Official Symbol
    Khdc4provided by MGI
    Official Full Name
    KH domain containing 4, pre-mRNA splicing factorprovided by MGI
    Primary source
    MGI:MGI:1921450
    See related
    Ensembl:ENSMUSG00000028060
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Blom7; AI256352; AI451678; Kiaa0907; 2810403A07Rik; A430106P18Rik
    Expression
    Ubiquitous expression in limb E14.5 (RPKM 32.4), CNS E14 (RPKM 30.0) and 28 other tissues See more
    Orthologs

    Genomic context

    See Khdc4 in Genome Data Viewer
    Location:
    3; 3 F1
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 3 NC_000069.6 (88685780..88712933)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 3 NC_000069.5 (88489716..88516855)

    Chromosome 3 - NC_000069.6Genomic Context describing neighboring genes Neighboring gene rho/rac guanine nucleotide exchange factor (GEF) 2 Neighboring gene predicted gene 20652 Neighboring gene relaxin family peptide receptor 4 Neighboring gene Ras-like without CAAX 1 Neighboring gene synaptotagmin XI

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    RNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    RNA binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    RNA binding ISO
    Inferred from Sequence Orthology
    more info
     
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    RNA splicing IEA
    Inferred from Electronic Annotation
    more info
     
    mRNA processing IEA
    Inferred from Electronic Annotation
    more info
     
    mRNA splice site selection ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    nucleus ISO
    Inferred from Sequence Orthology
    more info
     
    colocalizes_with spliceosomal complex ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    KH homology domain-containing protein 4; UPF0469 protein KIAA0907
    Names
    brings lots of money 7
    pre-mRNA splicing factor protein Khdc4
    protein BLOM7

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_028814.4NP_083090.2  KH homology domain-containing protein 4

      See identical proteins and their annotated locations for NP_083090.2

      Status: VALIDATED

      Source sequence(s)
      AC134246, AK012969, BY097934, CX562176
      Consensus CDS
      CCDS17483.1
      UniProtKB/Swiss-Prot
      Q3TCX3
      Related
      ENSMUSP00000029696.6, ENSMUST00000029696.10
      Conserved Domains (1) summary
      cl00098
      Location:234324
      KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...

    RNA

    1. NR_151825.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC134246
    2. NR_151826.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC134246
    3. NR_151827.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC134246

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000069.6 Reference GRCm38.p4 C57BL/6J

      Range
      88685780..88712933
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017319752.1XP_017175241.1  UPF0469 protein KIAA0907 isoform X1

    RNA

    1. XR_867238.1 RNA Sequence

      Related
      ENSMUST00000199684.4
    2. XR_375589.1 RNA Sequence

      Related
      ENSMUST00000198042.4
    3. XR_001783760.1 RNA Sequence

    4. XR_375591.1 RNA Sequence

    5. XR_375592.1 RNA Sequence

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