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    Khdc4 KH domain containing 4, pre-mRNA splicing factor [ Mus musculus (house mouse) ]

    Gene ID: 74200, updated on 23-Jun-2021

    Summary

    Official Symbol
    Khdc4provided by MGI
    Official Full Name
    KH domain containing 4, pre-mRNA splicing factorprovided by MGI
    Primary source
    MGI:MGI:1921450
    See related
    Ensembl:ENSMUSG00000028060
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Blom7; AI256352; AI451678; Kiaa0907; 2810403A07Rik; A430106P18Rik
    Expression
    Ubiquitous expression in limb E14.5 (RPKM 32.4), CNS E14 (RPKM 30.0) and 28 other tissues See more
    Orthologs
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    Genomic context

    See Khdc4 in Genome Data Viewer
    Location:
    3; 3 F1
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (88593087..88620240)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (88685428..88712933)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 3 NC_000069.5 (88489716..88516855)

    Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene rho/rac guanine nucleotide exchange factor (GEF) 2 Neighboring gene predicted gene 20652 Neighboring gene relaxin family peptide receptor 4 Neighboring gene predicted gene, 25820 Neighboring gene Ras-like without CAAX 1 Neighboring gene synaptotagmin XI

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables RNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables RNA binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables RNA binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within RNA splicing IEA
    Inferred from Electronic Annotation
    more info
     
    acts_upstream_of_or_within mRNA processing IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in mRNA splice site selection ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    located_in cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in nucleus ISO
    Inferred from Sequence Orthology
    more info
     
    part_of spliceosomal complex ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    KH homology domain-containing protein 4
    Names
    brings lots of money 7
    pre-mRNA splicing factor protein Khdc4
    protein BLOM7

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_028814.4NP_083090.2  KH homology domain-containing protein 4

      See identical proteins and their annotated locations for NP_083090.2

      Status: VALIDATED

      Source sequence(s)
      AC134246, AK012969, BY097934, CX562176
      Consensus CDS
      CCDS17483.1
      UniProtKB/Swiss-Prot
      Q3TCX3
      Related
      ENSMUSP00000029696.7, ENSMUST00000029696.11
      Conserved Domains (1) summary
      cl00098
      Location:234324
      KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...

    RNA

    1. NR_151825.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC134246
      Related
      ENSMUST00000199684.5
    2. NR_151826.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC134246
      Related
      ENSMUST00000198042.5
    3. NR_151827.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC134246

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000069.7 Reference GRCm39 C57BL/6J

      Range
      88593087..88620240
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017319752.3XP_017175241.1  KH homology domain-containing protein 4 isoform X1

      Conserved Domains (1) summary
      cl00098
      Location:234324
      KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...

    RNA

    1. XR_003954405.2 RNA Sequence

    2. XR_375591.3 RNA Sequence

    3. XR_003954406.2 RNA Sequence

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