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    Elob elongin B [ Mus musculus (house mouse) ]

    Gene ID: 67673, updated on 8-Jul-2021

    Summary

    Official Symbol
    Elobprovided by MGI
    Official Full Name
    elongin Bprovided by MGI
    Primary source
    MGI:MGI:1914923
    See related
    Ensembl:ENSMUSG00000055839
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Tceb2; 0610040H15Rik
    Expression
    Ubiquitous expression in testis adult (RPKM 383.1), large intestine adult (RPKM 213.2) and 28 other tissues See more
    Orthologs
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    Genomic context

    See Elob in Genome Data Viewer
    Location:
    17; 17 A3.3
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (24043714..24048083, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (23824740..23829109, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 17 NC_000083.5 (23961707..23966076, complement)

    Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 52285 Neighboring gene serine/arginine repetitive matrix 2 Neighboring gene microRNA 5125 Neighboring gene protease, serine 33 Neighboring gene protease, serine 41

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables protein-containing complex binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables transcription coactivator activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables ubiquitin protein ligase binding ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    part_of Cul2-RING ubiquitin ligase complex ISO
    Inferred from Sequence Orthology
    more info
     
    part_of Cul5-RING ubiquitin ligase complex ISO
    Inferred from Sequence Orthology
    more info
     
    part_of VCB complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    part_of VCB complex ISO
    Inferred from Sequence Orthology
    more info
     
    located_in cytosol TAS
    Traceable Author Statement
    more info
     
    part_of elongin complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    part_of elongin complex IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
     
    part_of transcription regulator complex ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    elongin-B
    Names
    18 kDa, elongin B
    RNA polymerase II transcription factor SIII subunit B
    SIII p18
    elongin 18 kDa subunit
    transcription elongation factor B (SIII), polypeptide 2 (18 kDa, elongin B)
    transcription elongation factor B polypeptide 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_026305.2NP_080581.1  elongin-B

      See identical proteins and their annotated locations for NP_080581.1

      Status: PROVISIONAL

      Source sequence(s)
      AK002868
      Consensus CDS
      CCDS57055.1
      UniProtKB/Swiss-Prot
      P62869
      Related
      ENSMUSP00000066210.6, ENSMUST00000069579.7
      Conserved Domains (1) summary
      cd01788
      Location:2102
      Ubl_ElonginB; ubiquitin-like (Ubl) domain found in transcription elongation factor B (Elongin B) and similar proteins

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000083.7 Reference GRCm39 C57BL/6J

      Range
      24043714..24048083 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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