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    Kdelr2 KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2 [ Mus musculus (house mouse) ]

    Gene ID: 66913, updated on 9-Sep-2018

    Summary

    Official Symbol
    Kdelr2provided by MGI
    Official Full Name
    KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2provided by MGI
    Primary source
    MGI:MGI:1914163
    See related
    Ensembl:ENSMUSG00000079111 Vega:OTTMUSG00000054914
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    1110007A14Rik
    Expression
    Ubiquitous expression in duodenum adult (RPKM 116.2), colon adult (RPKM 108.7) and 28 other tissues See more
    Orthologs

    Genomic context

    See Kdelr2 in Genome Data Viewer
    Location:
    5; 5 G2
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 5 NC_000071.6 (143403820..143421904)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 5 NC_000071.5 (144165499..144182955)

    Chromosome 5 - NC_000071.6Genomic Context describing neighboring genes Neighboring gene glutamate receptor, ionotropic, delta 2 (Grid2) interacting protein 1 Neighboring gene predicted gene, 38736 Neighboring gene predicted gene 20635 Neighboring gene cyclin B1 pseudogene Neighboring gene predicted gene 9497

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Pathways from BioSystems

    General gene information

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    ER retention sequence binding IEA
    Inferred from Electronic Annotation
    more info
     
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    ER to Golgi vesicle-mediated transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    protein retention in ER lumen IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    protein transport IEA
    Inferred from Electronic Annotation
    more info
     
    vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    Golgi apparatus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    cis-Golgi network IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    cis-Golgi network ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    endoplasmic reticulum IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    endoplasmic reticulum ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    ER lumen protein-retaining receptor 2
    Names
    KDEL endoplasmic reticulum protein retention receptor 2
    KDEL receptor 2

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_025841.4NP_080117.1  ER lumen protein-retaining receptor 2

      See identical proteins and their annotated locations for NP_080117.1

      Status: VALIDATED

      Source sequence(s)
      AA823141, AK150402, CJ173962
      Consensus CDS
      CCDS39369.1
      UniProtKB/Swiss-Prot
      Q9CQM2
      Related
      ENSMUSP00000106359.2, OTTMUSP00000071916, ENSMUST00000110731.3, OTTMUST00000136090
      Conserved Domains (1) summary
      pfam00810
      Location:28169
      ER_lumen_recept; ER lumen protein retaining receptor

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000071.6 Reference GRCm38.p4 C57BL/6J

      Range
      143403820..143421904
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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