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    Supt20 suppressor of Ty 20 [ Mus musculus (house mouse) ]

    Gene ID: 56790, updated on 31-Jan-2019

    Summary

    Official Symbol
    Supt20provided by MGI
    Official Full Name
    suppressor of Ty 20provided by MGI
    Primary source
    MGI:MGI:1929651
    See related
    Ensembl:ENSMUSG00000027751
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    p38IP; Fam48a; Supt20h; AA667204; AI450544; D3Ertd300e
    Expression
    Ubiquitous expression in testis adult (RPKM 74.7), limb E14.5 (RPKM 29.1) and 27 other tissues See more
    Orthologs

    Genomic context

    See Supt20 in Genome Data Viewer
    Location:
    3; 3 C
    Exon count:
    29
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 3 NC_000069.6 (54692760..54728763)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 3 NC_000069.5 (54497027..54520759)

    Chromosome 3 - NC_000069.6Genomic Context describing neighboring genes Neighboring gene predicted gene, 40050 Neighboring gene REX1, RNA exonuclease 1 homolog pseudogene Neighboring gene exosome component 8 Neighboring gene asparagine-linked glycosylation 5 (dolichyl-phosphate beta-glucosyltransferase) Neighboring gene SMAD family member 9

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Pathways from BioSystems

    • Autophagy - animal, organism-specific biosystem (from KEGG)
      Autophagy - animal, organism-specific biosystemAutophagy (or macroautophagy) is a cellular catabolic pathway involving in protein degradation, organelle turnover, and non-selective breakdown of cytoplasmic components, which is evolutionarily cons...
    • Autophagy - animal, conserved biosystem (from KEGG)
      Autophagy - animal, conserved biosystemAutophagy (or macroautophagy) is a cellular catabolic pathway involving in protein degradation, organelle turnover, and non-selective breakdown of cytoplasmic components, which is evolutionarily cons...

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    transcription coregulator activity IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    SAGA complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    transcription factor SPT20 homolog
    Names
    family with sequence similarity 48, member A
    p38-interacting protein
    protein FAM48A
    transcription factor (p38 interacting protein)

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001358015.1NP_001344944.1  transcription factor SPT20 homolog isoform 1

      Status: VALIDATED

      Source sequence(s)
      AC100927
      Conserved Domains (2) summary
      pfam12090
      Location:77217
      Spt20; Spt20 family
      cl25496
      Location:480769
      Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    2. NM_001358017.1NP_001344946.1  transcription factor SPT20 homolog isoform 2

      Status: VALIDATED

      Source sequence(s)
      AC100927
      Conserved Domains (2) summary
      pfam12090
      Location:76216
      Spt20; Spt20 family
      cl25496
      Location:479768
      Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    3. NM_019995.4NP_064379.1  transcription factor SPT20 homolog isoform 3

      See identical proteins and their annotated locations for NP_064379.1

      Status: VALIDATED

      Source sequence(s)
      AC100927
      Consensus CDS
      CCDS38431.1
      UniProtKB/Swiss-Prot
      Q7TT00
      Related
      ENSMUSP00000131454.1, ENSMUST00000170552.5
      Conserved Domains (1) summary
      pfam12090
      Location:64226
      Spt20; Spt20 family

    RNA

    1. NR_152184.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC100927
    2. NR_152185.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC100927
    3. NR_152186.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC100927

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000069.6 Reference GRCm38.p4 C57BL/6J

      Range
      54692760..54728763
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006501804.1XP_006501867.1  transcription factor SPT20 homolog isoform X1

      See identical proteins and their annotated locations for XP_006501867.1

      Conserved Domains (2) summary
      pfam12090
      Location:77217
      Spt20; Spt20 family
      cl25496
      Location:480769
      Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    2. XM_006501801.1XP_006501864.1  transcription factor SPT20 homolog isoform X1

      See identical proteins and their annotated locations for XP_006501864.1

      Conserved Domains (2) summary
      pfam12090
      Location:77217
      Spt20; Spt20 family
      cl25496
      Location:480769
      Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    3. XM_006501811.1XP_006501874.1  transcription factor SPT20 homolog isoform X5

      Conserved Domains (1) summary
      pfam12090
      Location:64226
      Spt20; Spt20 family
    4. XM_006501812.1XP_006501875.1  transcription factor SPT20 homolog isoform X6

      Conserved Domains (1) summary
      pfam12090
      Location:64226
      Spt20; Spt20 family
    5. XM_006501814.1XP_006501877.1  transcription factor SPT20 homolog isoform X8

      See identical proteins and their annotated locations for XP_006501877.1

      Conserved Domains (1) summary
      pfam12090
      Location:64226
      Spt20; Spt20 family
    6. XM_006501808.1XP_006501871.1  transcription factor SPT20 homolog isoform X3

      Conserved Domains (1) summary
      pfam12090
      Location:64226
      Spt20; Spt20 family
    7. XM_006501815.1XP_006501878.1  transcription factor SPT20 homolog isoform X9

      UniProtKB/TrEMBL
      A0A0G2JGY6
      Related
      ENSMUSP00000143750.1, ENSMUST00000197502.4
      Conserved Domains (1) summary
      pfam12090
      Location:63225
      Spt20; Spt20 family
    8. XM_006501810.1XP_006501873.1  transcription factor SPT20 homolog isoform X4

      Conserved Domains (1) summary
      pfam12090
      Location:63225
      Spt20; Spt20 family
    9. XM_006501813.1XP_006501876.1  transcription factor SPT20 homolog isoform X7

      Conserved Domains (1) summary
      pfam12090
      Location:3157
      Spt20; Spt20 family
    10. XM_006501806.2XP_006501869.1  transcription factor SPT20 homolog isoform X2

      See identical proteins and their annotated locations for XP_006501869.1

      Conserved Domains (2) summary
      pfam12090
      Location:76216
      Spt20; Spt20 family
      cl25496
      Location:479768
      Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    11. XM_006501802.2XP_006501865.1  transcription factor SPT20 homolog isoform X1

      See identical proteins and their annotated locations for XP_006501865.1

      Conserved Domains (2) summary
      pfam12090
      Location:77217
      Spt20; Spt20 family
      cl25496
      Location:480769
      Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    12. XM_006501807.3XP_006501870.1  transcription factor SPT20 homolog isoform X2

      See identical proteins and their annotated locations for XP_006501870.1

      Conserved Domains (2) summary
      pfam12090
      Location:76216
      Spt20; Spt20 family
      cl25496
      Location:479768
      Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    13. XM_006501809.2XP_006501872.1  transcription factor SPT20 homolog isoform X2

      See identical proteins and their annotated locations for XP_006501872.1

      Conserved Domains (2) summary
      pfam12090
      Location:76216
      Spt20; Spt20 family
      cl25496
      Location:479768
      Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    14. XM_006501803.1XP_006501866.1  transcription factor SPT20 homolog isoform X1

      See identical proteins and their annotated locations for XP_006501866.1

      Conserved Domains (2) summary
      pfam12090
      Location:77217
      Spt20; Spt20 family
      cl25496
      Location:480769
      Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    15. XM_006501805.1XP_006501868.1  transcription factor SPT20 homolog isoform X1

      See identical proteins and their annotated locations for XP_006501868.1

      Conserved Domains (2) summary
      pfam12090
      Location:77217
      Spt20; Spt20 family
      cl25496
      Location:480769
      Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)

    RNA

    1. XR_001783729.1 RNA Sequence

    2. XR_375560.3 RNA Sequence

    3. XR_001783728.1 RNA Sequence

    4. XR_001783726.1 RNA Sequence

    5. XR_001783727.1 RNA Sequence

    6. XR_001783730.1 RNA Sequence

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