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    pskh1 protein serine kinase H1 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 549784, updated on 25-Apr-2024

    Summary

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    Official Symbol
    pskh1provided by Xenbase
    Official Full Name
    protein serine kinase H1provided by Xenbase
    Primary source
    Xenbase:XB-GENE-947381
    See related
    Ensembl:ENSXETG00000018464
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 4 NC_030680.2 (43343167..43357533, complement)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 4 NC_030680.1 (45984762..45997173, complement)

    Chromosome 4 - NC_030680.2Genomic Context describing neighboring genes Neighboring gene DEAD-box helicase 28 Neighboring gene dihydrouridine synthase 2 Neighboring gene uncharacterized LOC116410368 Neighboring gene uncharacterized LOC101731526 Neighboring gene naked cuticle homolog 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein serine/threonine kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in lysosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    serine/threonine-protein kinase H1
    NP_001017030.1
    XP_012816622.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001017030.2 → NP_001017030.1  serine/threonine-protein kinase H1

      See identical proteins and their annotated locations for NP_001017030.1

      Status: PROVISIONAL

      Source sequence(s)
      CR762032
      UniProtKB/TrEMBL
      F6V473, Q28FC8
      Conserved Domains (1) summary
      cd14087
      Location:88 → 347
      STKc_PSKH1; Catalytic domain of the Protein Serine/Threonine kinase H1

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030680.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      43343167..43357533 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_012961168.3 → XP_012816622.1  serine/threonine-protein kinase H1 isoform X1

      See identical proteins and their annotated locations for XP_012816622.1

      UniProtKB/TrEMBL
      F6V473, Q28FC8
      Related
      ENSXETP00000039981.2, ENSXETT00000039981.4
      Conserved Domains (1) summary
      cd14087
      Location:88 → 347
      STKc_PSKH1; Catalytic domain of the Protein Serine/Threonine kinase H1
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.