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    Atxn1l ataxin 1-like [ Mus musculus (house mouse) ]

    Gene ID: 52335, updated on 8-Feb-2019

    Summary

    Official Symbol
    Atxn1lprovided by MGI
    Official Full Name
    ataxin 1-likeprovided by MGI
    Primary source
    MGI:MGI:3694797
    See related
    Ensembl:ENSMUSG00000069895
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Boat; D6Mgi37; AW558552; D8Ertd587e; C330011L24Rik
    Expression
    Ubiquitous expression in testis adult (RPKM 14.3), lung adult (RPKM 9.6) and 28 other tissues See more
    Orthologs

    Genomic context

    See Atxn1l in Genome Data Viewer
    Location:
    8 D3; 8 57.22 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 8 NC_000074.6 (109726451..109737795, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 8 NC_000074.5 (112250351..112261639, complement)

    Chromosome 8 - NC_000074.6Genomic Context describing neighboring genes Neighboring gene polycystic kidney disease 1 like 3 Neighboring gene increased sodium tolerance 1 homolog (yeast) Neighboring gene zinc finger protein 821 Neighboring gene predicted gene, 39248 Neighboring gene La ribonucleoprotein domain family, member 1B pseudogene Neighboring gene adaptor protein complex AP-1, gamma 1 subunit Neighboring gene small nucleolar RNA, C/D box 71

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    RNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    protein binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    brain development IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    brain development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    extracellular matrix organization IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    learning IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    learning IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    lung alveolus development IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    lung alveolus development IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    lung alveolus development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    memory IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    memory IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    negative regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    negative regulation of transcription by RNA polymerase II IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    positive regulation of hematopoietic stem cell proliferation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    social behavior IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    social behavior IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    cell projection IEA
    Inferred from Electronic Annotation
    more info
     
    nucleolus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    nucleolus ISO
    Inferred from Sequence Orthology
    more info
     
    colocalizes_with nucleoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    nucleus ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    ataxin-1-like
    Names
    brother of ataxin-1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001080930.2NP_001074399.1  ataxin-1-like

      See identical proteins and their annotated locations for NP_001074399.1

      Status: VALIDATED

      Source sequence(s)
      AC132138
      Consensus CDS
      CCDS40474.1
      UniProtKB/Swiss-Prot
      P0C7T6
      Related
      ENSMUSP00000090850.3, ENSMUST00000093162.3
      Conserved Domains (1) summary
      pfam08517
      Location:473577
      AXH; Ataxin-1 and HBP1 module (AXH)
    2. NM_001368350.1NP_001355279.1  ataxin-1-like

      Status: VALIDATED

      Source sequence(s)
      AC132138
    3. NM_001368351.1NP_001355280.1  ataxin-1-like

      Status: VALIDATED

      Source sequence(s)
      AC132138
    4. NM_001368352.1NP_001355281.1  ataxin-1-like

      Status: VALIDATED

      Source sequence(s)
      AC132138

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000074.6 Reference GRCm38.p4 C57BL/6J

      Range
      109726451..109737795 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011248440.2XP_011246742.1  ataxin-1-like isoform X1

      UniProtKB/Swiss-Prot
      P0C7T6
      Related
      ENSMUSP00000148324.1, ENSMUST00000212605.1
      Conserved Domains (1) summary
      pfam08517
      Location:473577
      AXH; Ataxin-1 and HBP1 module (AXH)
    2. XM_011248441.2XP_011246743.1  ataxin-1-like isoform X1

      UniProtKB/Swiss-Prot
      P0C7T6
      Conserved Domains (1) summary
      pfam08517
      Location:473577
      AXH; Ataxin-1 and HBP1 module (AXH)
    3. XM_017312897.1XP_017168386.1  ataxin-1-like isoform X1

      UniProtKB/Swiss-Prot
      P0C7T6
      Conserved Domains (1) summary
      pfam08517
      Location:473577
      AXH; Ataxin-1 and HBP1 module (AXH)
    4. XM_011248439.2XP_011246741.1  ataxin-1-like isoform X1

      See identical proteins and their annotated locations for XP_011246741.1

      UniProtKB/Swiss-Prot
      P0C7T6
      Conserved Domains (1) summary
      pfam08517
      Location:473577
      AXH; Ataxin-1 and HBP1 module (AXH)
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