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    Atxn1l ataxin 1-like [ Mus musculus (house mouse) ]

    Gene ID: 52335, updated on 23-Jun-2021

    Summary

    Official Symbol
    Atxn1lprovided by MGI
    Official Full Name
    ataxin 1-likeprovided by MGI
    Primary source
    MGI:MGI:3694797
    See related
    Ensembl:ENSMUSG00000069895
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Bo; Boat; D6Mgi3; D6Mgi37; AW558552; D8Ertd587; D8Ertd587e; C330011L24Rik
    Expression
    Ubiquitous expression in testis adult (RPKM 14.3), lung adult (RPKM 9.6) and 28 other tissues See more
    Orthologs
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    Genomic context

    See Atxn1l in Genome Data Viewer
    Location:
    8 D3; 8 57.22 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (110453083..110464426, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (109726451..109737794, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 8 NC_000074.5 (112250351..112261639, complement)

    Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene polycystic kidney disease 1 like 3 Neighboring gene increased sodium tolerance 1 homolog (yeast) Neighboring gene zinc finger protein 821 Neighboring gene predicted gene, 53453 Neighboring gene predicted gene, 51550 Neighboring gene La ribonucleoprotein domain family, member 1B pseudogene Neighboring gene adaptor protein complex AP-1, gamma 1 subunit Neighboring gene predicted gene, 17344 Neighboring gene small nucleolar RNA, C/D box 71

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in cell projection IEA
    Inferred from Electronic Annotation
    more info
     
    located_in nucleolus ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    ataxin-1-like
    Names
    brother of ataxin-1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001080930.2NP_001074399.1  ataxin-1-like

      See identical proteins and their annotated locations for NP_001074399.1

      Status: VALIDATED

      Source sequence(s)
      AC132138
      Consensus CDS
      CCDS40474.1
      UniProtKB/Swiss-Prot
      P0C7T6
      Related
      ENSMUSP00000090850.4, ENSMUST00000093162.4
      Conserved Domains (2) summary
      PTZ00395
      Location:111302
      PTZ00395; Sec24-related protein; Provisional
      pfam08517
      Location:467578
      AXH; Ataxin-1 and HBP1 module (AXH)
    2. NM_001368350.1NP_001355279.1  ataxin-1-like

      Status: VALIDATED

      Source sequence(s)
      AC132138
      Consensus CDS
      CCDS40474.1
      Conserved Domains (2) summary
      PTZ00395
      Location:111302
      PTZ00395; Sec24-related protein; Provisional
      pfam08517
      Location:467578
      AXH; Ataxin-1 and HBP1 module (AXH)
    3. NM_001368351.1NP_001355280.1  ataxin-1-like

      Status: VALIDATED

      Source sequence(s)
      AC132138
      Consensus CDS
      CCDS40474.1
      Related
      ENSMUSP00000148324.2, ENSMUST00000212605.2
      Conserved Domains (2) summary
      PTZ00395
      Location:111302
      PTZ00395; Sec24-related protein; Provisional
      pfam08517
      Location:467578
      AXH; Ataxin-1 and HBP1 module (AXH)
    4. NM_001368352.1NP_001355281.1  ataxin-1-like

      Status: VALIDATED

      Source sequence(s)
      AC132138
      Consensus CDS
      CCDS40474.1
      Conserved Domains (2) summary
      PTZ00395
      Location:111302
      PTZ00395; Sec24-related protein; Provisional
      pfam08517
      Location:467578
      AXH; Ataxin-1 and HBP1 module (AXH)

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000074.7 Reference GRCm39 C57BL/6J

      Range
      110453083..110464426 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011248439.3XP_011246741.1  ataxin-1-like isoform X1

      See identical proteins and their annotated locations for XP_011246741.1

      UniProtKB/Swiss-Prot
      P0C7T6
      Conserved Domains (2) summary
      PTZ00395
      Location:111302
      PTZ00395; Sec24-related protein; Provisional
      pfam08517
      Location:467578
      AXH; Ataxin-1 and HBP1 module (AXH)
    2. XM_030243670.2XP_030099530.1  ataxin-1-like isoform X1

      Conserved Domains (2) summary
      PTZ00395
      Location:111302
      PTZ00395; Sec24-related protein; Provisional
      pfam08517
      Location:467578
      AXH; Ataxin-1 and HBP1 module (AXH)
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