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    CG33978 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 3885646, updated on 18-Sep-2024

    Summary

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    Official Symbol
    CG33978provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0053978
    Locus tag
    Dmel_CG33978
    See related
    AllianceGenome:FB:FBgn0053978
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    Dmel\CG33978; FBgn0053978
    Summary
    Predicted to enable calcium ion binding activity. Is expressed in spermatozoon. [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    all
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    Genomic context

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    See CG33978 in Genome Data Viewer
    Location:
    102A4-102A6; 4-0 cM
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 4 NC_004353.4 (157575..175639, complement)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 4 NC_004353.3 (178201..196265, complement)

    Chromosome 4 - NC_004353.4Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene antisense RNA:CR45198 Neighboring gene long non-coding RNA:CR46488 Neighboring gene ADP ribosylation factor-like 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Neurexin/N-Ethylmaleimide-sensitive Factor (NSF) Interaction Regulates Short Term Synaptic Depression. Li T, et al. J Biol Chem, 2015 Jul 17. PMID 25953899, Free PMC Article
    2. Competition within Introns: Splicing Wins over Polyadenylation via a General Mechanism. Tikhonov M, et al. Acta Naturae, 2013 Oct. PMID 24455183, Free PMC Article
    3. Gene transposition as a cause of hybrid sterility in Drosophila. Masly JP, et al. Science, 2006 Sep 8. PMID 16960009
    4. The Genetic Architecture of Ovariole Number in Drosophila melanogaster: Genes with Major, Quantitative, and Pleiotropic Effects. Lobell AS, et al. G3 (Bethesda), 2017 Jul 5. PMID 28550012, Free PMC Article
    5. Genome-wide identification of Grainy head targets in Drosophila reveals regulatory interactions with the POU domain transcription factor Vvl. Yao L, et al. Development, 2017 Sep 1. PMID 28760809, Free PMC Article

    See all (24) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    mobile_element

    • Loc: c158217-158191 mobile_element_type = transposon:1360{}4772
    • Loc: c165660-165270 mobile_element_type = transposon:INE-1{}5311

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG33978-PC
    CG33978-PD
    CG33978-PE
    CG33978-PF
    CG33978-PG

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_004353.4 Reference assembly

      Range
      157575..175639 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001272115.1 → NP_001259044.1  uncharacterized protein Dmel_CG33978, isoform D [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001259044.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      L0MLI5
      Conserved Domains (1) summary
      smart00179
      Location:1573 → 1620
      EGF_CA; Calcium-binding EGF-like domain

    2. NM_001272117.1 → NP_001259046.1  uncharacterized protein Dmel_CG33978, isoform G [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001259046.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      L0MPW2
      Conserved Domains (1) summary
      smart00179
      Location:1573 → 1620
      EGF_CA; Calcium-binding EGF-like domain

    3. NM_001272116.1 → NP_001259045.1  uncharacterized protein Dmel_CG33978, isoform F [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001259045.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      L0MPM5
      Conserved Domains (1) summary
      smart00179
      Location:1573 → 1620
      EGF_CA; Calcium-binding EGF-like domain

    4. NM_001258478.1 → NP_001245407.1  uncharacterized protein Dmel_CG33978, isoform C [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001245407.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      H9XVM2, Q2PDM3
      Conserved Domains (1) summary
      pfam15950
      Location:1127 → 1236
      DUF4758; Domain of unknown function (DUF4758)

    5. NM_001038712.3 → NP_001033801.3  uncharacterized protein Dmel_CG33978, isoform E [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001033801.3

      Status: REVIEWED

      UniProtKB/TrEMBL
      H9XVM2, Q2PDM3
      Conserved Domains (1) summary
      pfam15950
      Location:1127 → 1236
      DUF4758; Domain of unknown function (DUF4758)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    L0MLI5 L0MLI5
    L0MPM5 L0MPM5
    L0MPW2 L0MPW2
    Q2PDM3 Q2PDM3

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