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    CG43338 [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 35117, updated on 27-Mar-2024

    Summary

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    Official Symbol
    CG43338provided by FlyBase
    Primary source
    FLYBASE:FBgn0263079
    Locus tag
    Dmel_CG43338
    See related
    AllianceGenome:FB:FBgn0263079
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    CG15165; CG31790; CG42627; Dmel\CG43338
    Old locus tag
    Dmel_CG31790
    Summary
    Orthologous to human CCDC170 (coiled-coil domain containing 170). [provided by Alliance of Genome Resources, Apr 2022]
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    Genomic context

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    Location:
    36F10-36F10; 2-53 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2L NT_033779.5 (18666892..18671246, complement)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2L NT_033779.4 (18666892..18671246, complement)

    Chromosome 2L - NT_033779.5Genomic Context describing neighboring genes Neighboring gene Intraflagellar transport 46 Neighboring gene Misexpression suppressor of ras 3 Neighboring gene Cytochrome P450 310a1 Neighboring gene pseudo Neighboring gene uncharacterized protein Neighboring gene Male-specific transcript 36Fb

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Messenger RNA is a functional component of a chromatin insulator complex. Matzat LH, et al. EMBO Rep, 2013 Oct. PMID 23917615, Free PMC Article
    2. Genes conserved in bilaterians but jointly lost with Myc during nematode evolution are enriched in cell proliferation and cell migration functions. Erives AJ. Dev Genes Evol, 2015 Sep. PMID 26173873, Free PMC Article
    3. CRISPR-based modular assembly of a UAS-cDNA/ORF plasmid library for more than 5500 Drosophila genes conserved in humans. Wei P, et al. Genome Res, 2020 Jan. PMID 31722958, Free PMC Article
    4. Systematic genetic analysis of muscle morphogenesis and function in Drosophila. Schnorrer F, et al. Nature, 2010 Mar 11. PMID 20220848
    5. High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression. Batut P, et al. Genome Res, 2013 Jan. PMID 22936248, Free PMC Article

    See all (19) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG43338-PA
    CG43338-PB

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033779.5 Reference assembly

      Range
      18666892..18671246 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001259151.2 → NP_001246080.1  uncharacterized protein Dmel_CG43338, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001246080.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      M9NDT0
      Conserved Domains (2) summary
      TIGR02168
      Location:77 → 412
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      TIGR02169
      Location:305 → 644
      SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type

    2. NM_165257.2 → NP_724119.1  uncharacterized protein Dmel_CG43338, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_724119.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8MSR8, Q9VJ69
      Related
      FBpp0297774
      Conserved Domains (2) summary
      TIGR02168
      Location:50 → 385
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      TIGR02169
      Location:278 → 617
      SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    M9NDT0 M9NDT0
    Q9VJ69 Q9VJ69

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