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    Fam104a family with sequence similarity 104, member A [ Mus musculus (house mouse) ]

    Gene ID: 28081, updated on 23-Jun-2021

    Summary

    Official Symbol
    Fam104aprovided by MGI
    Official Full Name
    family with sequence similarity 104, member Aprovided by MGI
    Primary source
    MGI:MGI:106351
    See related
    Ensembl:ENSMUSG00000041629
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    D11Wsu99; D11Wsu99e
    Expression
    Ubiquitous expression in testis adult (RPKM 65.2), adrenal adult (RPKM 28.3) and 28 other tissues See more
    Orthologs
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    Genomic context

    See Fam104a in Genome Data Viewer
    Location:
    11 E2; 11 79.12 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (113552145..113574988, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (113661319..113684189, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 11 NC_000077.5 (113522633..113545465, complement)

    Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene solute carrier family 39 (metal ion transporter), member 11 Neighboring gene predicted gene, 51928 Neighboring gene somatostatin receptor 2 Neighboring gene DNA segment, Chr 11, Wayne State University 47, expressed Neighboring gene component of oligomeric golgi complex 1 Neighboring gene cleavage and polyadenylation specific factor 4-like Neighboring gene CDC42 effector protein (Rho GTPase binding) 4

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (1) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001362751.1NP_001349680.1  protein FAM104A isoform 1

      Status: VALIDATED

      Source sequence(s)
      AK158872, AL603706, BC056429
      Conserved Domains (1) summary
      pfam15434
      Location:76186
      FAM104; Family 104
    2. NM_138598.5NP_613064.2  protein FAM104A isoform 2

      See identical proteins and their annotated locations for NP_613064.2

      Status: VALIDATED

      Source sequence(s)
      AK087540, AL603706, AV572367, BC056429
      Consensus CDS
      CCDS25600.2
      UniProtKB/TrEMBL
      A2A6P4, Q9CQP1
      Related
      ENSMUSP00000113652.2, ENSMUST00000120194.2
      Conserved Domains (1) summary
      pfam15434
      Location:80185
      FAM104; Family 104

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000077.7 Reference GRCm39 C57BL/6J

      Range
      113552145..113574988 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011249064.4XP_011247366.1  protein FAM104A isoform X1

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