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    Rundc3b RUN domain containing 3B [ Mus musculus (house mouse) ]

    Gene ID: 242819, updated on 23-Jun-2021

    Summary

    Official Symbol
    Rundc3bprovided by MGI
    Official Full Name
    RUN domain containing 3Bprovided by MGI
    Primary source
    MGI:MGI:2685286
    See related
    Ensembl:ENSMUSG00000040570
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm440
    Expression
    Biased expression in CNS E18 (RPKM 12.7), whole brain E14.5 (RPKM 8.8) and 9 other tissues See more
    Orthologs
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    Genomic context

    See Rundc3b in Genome Data Viewer
    Location:
    5; 5 A1
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (8540336..8673079, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (8490336..8623084, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 5 NC_000071.5 (8490336..8622952, complement)

    Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene a disintegrin and metallopeptidase domain 22 Neighboring gene ribosomal protein L19 pseudogene Neighboring gene solute carrier family 25, member 40 Neighboring gene DBF4 zinc finger Neighboring gene ATP-binding cassette, sub-family B (MDR/TAP), member 1A Neighboring gene predicted gene, 31157 Neighboring gene predicted gene 5106 Neighboring gene ATP-binding cassette, sub-family B (MDR/TAP), member 1B

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Homology

    Clone Names

    • MGC68340

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    RUN domain-containing protein 3B

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001347311.1NP_001334240.1  RUN domain-containing protein 3B isoform 1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1).
      Source sequence(s)
      AC107733, AC121955, AC152165
      Consensus CDS
      CCDS84841.1
      UniProtKB/TrEMBL
      D3YUQ5
      Related
      ENSMUSP00000111036.2, ENSMUST00000115378.2
    2. NM_001359961.1NP_001346890.1  RUN domain-containing protein 3B isoform 3

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) lacks two alternate exons in the 3' coding region, that causes a frameshift. The resulting isoform (3) has a shorter and distinct C-terminus compared to isoform 1.
      Source sequence(s)
      AC107733, AC121955, AC152165
      Conserved Domains (1) summary
      pfam02759
      Location:66187
      RUN; RUN domain
    3. NM_198620.1NP_941022.1  RUN domain-containing protein 3B isoform 2

      See identical proteins and their annotated locations for NP_941022.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks an alternate in-frame exon compared to variant 1. The resulting isoform (2) has the same N- and C- termini but is shorter compared to isoform 1.
      Source sequence(s)
      BC058808
      Consensus CDS
      CCDS19083.1
      UniProtKB/Swiss-Prot
      Q6PDC0
      Related
      ENSMUSP00000040108.9, ENSMUST00000047485.15
      Conserved Domains (1) summary
      pfam02759
      Location:66189
      RUN; RUN domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000071.7 Reference GRCm39 C57BL/6J

      Range
      8540336..8673079 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006503578.4XP_006503641.1  RUN domain-containing protein 3B isoform X1

      Conserved Domains (1) summary
      pfam02759
      Location:66187
      RUN; RUN domain
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