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    Ccdc28a coiled-coil domain containing 28A [ Mus musculus (house mouse) ]

    Gene ID: 215814, updated on 31-Jan-2019

    Summary

    Official Symbol
    Ccdc28aprovided by MGI
    Official Full Name
    coiled-coil domain containing 28Aprovided by MGI
    Primary source
    MGI:MGI:2443508
    See related
    Ensembl:ENSMUSG00000059554
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    AI480677; 1700009P13Rik
    Expression
    Ubiquitous expression in testis adult (RPKM 26.8), cerebellum adult (RPKM 11.9) and 28 other tissues See more
    Orthologs

    Genomic context

    See Ccdc28a in Genome Data Viewer
    Location:
    10; 10 A3
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 10 NC_000076.6 (18213685..18234981, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 10 NC_000076.5 (17933491..17954787, complement)

    Chromosome 10 - NC_000076.6Genomic Context describing neighboring genes Neighboring gene RalBP1 associated Eps domain containing protein Neighboring gene epithelial cell transforming sequence 2 oncogene-like Neighboring gene NHS-like 1 Neighboring gene family with sequence similarity 54, member A pseudogene Neighboring gene predicted gene, 38480

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (3) 

    General gene information

    Markers

    Homology

    Clone Names

    • MGC19351

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    coiled-coil domain-containing protein 28A

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001346751.1NP_001333680.1  coiled-coil domain-containing protein 28A isoform 2

      Status: VALIDATED

      Source sequence(s)
      AC153562
      UniProtKB/TrEMBL
      Q8CEI3
    2. NM_144820.4NP_659069.2  coiled-coil domain-containing protein 28A isoform 1

      See identical proteins and their annotated locations for NP_659069.2

      Status: VALIDATED

      Source sequence(s)
      AK148447, AW048156
      Consensus CDS
      CCDS35852.1
      UniProtKB/TrEMBL
      Q3UFK1
      Related
      ENSMUSP00000079671.6, ENSMUST00000080860.12
      Conserved Domains (1) summary
      pfam13270
      Location:83167
      DUF4061; Domain of unknown function (DUF4061)

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000076.6 Reference GRCm38.p4 C57BL/6J

      Range
      18213685..18234981 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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