Format

Send to:

Choose Destination
    • Showing Current items.

    Ifrd1 interferon-related developmental regulator 1 [ Mus musculus (house mouse) ]

    Gene ID: 15982, updated on 12-Aug-2018

    Summary

    Official Symbol
    Ifrd1provided by MGI
    Official Full Name
    interferon-related developmental regulator 1provided by MGI
    Primary source
    MGI:MGI:1316717
    See related
    Ensembl:ENSMUSG00000001627 Vega:OTTMUSG00000035474
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    PC4; Ifnl; Tis7
    Expression
    Ubiquitous expression in small intestine adult (RPKM 45.7), duodenum adult (RPKM 33.2) and 28 other tissues See more
    Orthologs

    Genomic context

    See Ifrd1 in Genome Data Viewer
    Location:
    12 B1; 12 18.06 cM
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 12 NC_000078.6 (40203129..40223189, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 12 NC_000078.5 (40929716..40949776, complement)

    Chromosome 12 - NC_000078.6Genomic Context describing neighboring genes Neighboring gene scinderin Neighboring gene leucine-rich single-pass membrane protein 1 Neighboring gene microRNA 1938 Neighboring gene predicted gene 7008 Neighboring gene predicted gene, 40403

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    RNA polymerase II sequence-specific DNA-binding transcription factor binding ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    cell differentiation IEA
    Inferred from Electronic Annotation
    more info
     
    multicellular organism development IEA
    Inferred from Electronic Annotation
    more info
     
    muscle cell differentiation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    negative regulation of axon extension IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    negative regulation of collateral sprouting IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    positive regulation of DNA-binding transcription factor activity ISO
    Inferred from Sequence Orthology
    more info
     
    positive regulation of transcription by RNA polymerase II ISO
    Inferred from Sequence Orthology
    more info
     
    skeletal muscle tissue regeneration IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    striated muscle tissue development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 
    nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    interferon-related developmental regulator 1
    Names
    TPA-induced sequence 7
    nerve growth factor-inducible protein PC4

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_013562.2NP_038590.2  interferon-related developmental regulator 1

      See identical proteins and their annotated locations for NP_038590.2

      Status: VALIDATED

      Source sequence(s)
      AC157571, BC043723
      Consensus CDS
      CCDS25893.1
      UniProtKB/Swiss-Prot
      P19182
      Related
      ENSMUSP00000001672.5, OTTMUSP00000049857, ENSMUST00000001672.11, OTTMUST00000090788
      Conserved Domains (2) summary
      pfam04836
      Location:390443
      IFRD_C; Interferon-related protein conserved region
      pfam05004
      Location:40344
      IFRD; Interferon-related developmental regulator (IFRD)

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000078.6 Reference GRCm38.p4 C57BL/6J

      Range
      40203129..40223189 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Support Center