U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    ANKRD60 ankyrin repeat domain 60 [ Homo sapiens (human) ]

    Gene ID: 140731, updated on 5-Mar-2024

    Summary

    Official Symbol
    ANKRD60provided by HGNC
    Official Full Name
    ankyrin repeat domain 60provided by HGNC
    Primary source
    HGNC:HGNC:16217
    See related
    Ensembl:ENSG00000124227 AllianceGenome:HGNC:16217
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    C20orf86; bA196N14.3
    Expression
    Low expression observed in reference dataset See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See ANKRD60 in Genome Data Viewer
    Location:
    20q13.32
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 20 NC_000020.11 (58216126..58228653, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 20 NC_060944.1 (59997151..60009656, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 20 NC_000020.10 (56791182..56803709, complement)

    Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107985434 Neighboring gene uncharacterized LOC105372694 Neighboring gene ciliary microtubule inner protein 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:56750743-56751243 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13068 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13069 Neighboring gene H3K27ac hESC enhancer GRCh37_chr20:56816520-56817020 Neighboring gene protein phosphatase 4 regulatory subunit 1 like (pseudogene) Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:56877500-56878000 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13070 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13071 Neighboring gene RAB22A, member RAS oncogene family

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    General protein information

    Preferred Names
    ankyrin repeat domain-containing protein 60

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001304369.2NP_001291298.1  ankyrin repeat domain-containing protein 60

      See identical proteins and their annotated locations for NP_001291298.1

      Status: VALIDATED

      Source sequence(s)
      AL354776
      Consensus CDS
      CCDS77596.1
      UniProtKB/Swiss-Prot
      Q4VXE6, Q9BZ19
      Related
      ENSP00000396747.1, ENST00000457363.2
      Conserved Domains (4) summary
      cd01769
      Location:103163
      UBL; Ubiquitin-like domain of UBL
      cd00204
      Location:171298
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam13857
      Location:239293
      Ank_5; Ankyrin repeats (many copies)
      sd00045
      Location:223250
      ANK; ANK repeat [structural motif]

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000020.11 Reference GRCh38.p14 Primary Assembly

      Range
      58216126..58228653 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_047439903.1XP_047295859.1  ankyrin repeat domain-containing protein 60 isoform X2

    2. XM_047439902.1XP_047295858.1  ankyrin repeat domain-containing protein 60 isoform X1

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060944.1 Alternate T2T-CHM13v2.0

      Range
      59997151..60009656 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054323014.1XP_054178989.1  ankyrin repeat domain-containing protein 60 isoform X2

    2. XM_054323013.1XP_054178988.1  ankyrin repeat domain-containing protein 60 isoform X1

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_080674.1: Suppressed sequence

      Description
      NM_080674.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.