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    Ell elongation factor RNA polymerase II [ Mus musculus (house mouse) ]

    Gene ID: 13716, updated on 2-Oct-2018

    Summary

    Official Symbol
    Ellprovided by MGI
    Official Full Name
    elongation factor RNA polymerase IIprovided by MGI
    Primary source
    MGI:MGI:109377
    See related
    Ensembl:ENSMUSG00000070002 Vega:OTTMUSG00000061444
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Men; Ell1
    Expression
    Ubiquitous expression in testis adult (RPKM 19.6), colon adult (RPKM 17.4) and 28 other tissues See more
    Orthologs

    Genomic context

    See Ell in Genome Data Viewer
    Location:
    8; 8 B3.3
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 8 NC_000074.6 (70539675..70592858)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 8 NC_000074.5 (73063574..73116757)

    Chromosome 8 - NC_000074.6Genomic Context describing neighboring genes Neighboring gene KxDL motif containing 1 Neighboring gene FK506 binding protein 8 Neighboring gene myo-inositol 1-phosphate synthase A1 Neighboring gene single stranded DNA binding protein 4

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    phosphatase binding ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    Cajal body ISO
    Inferred from Sequence Orthology
    more info
     
    histone locus body ISO
    Inferred from Sequence Orthology
    more info
     
    nuclear speck ISO
    Inferred from Sequence Orthology
    more info
     
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     
    transcription elongation factor complex ISO
    Inferred from Sequence Orthology
    more info
     
    transcriptionally active chromatin ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    RNA polymerase II elongation factor ELL
    Names
    RNA POLYMERASE II ELONGATION FACTOR ELL (ELEVEN-NINETEEN LYSINE-RICH LEUKEMIA PROTEIN)
    eleven-nineteen lysine-rich leukemia protein

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_007924.2NP_031950.2  RNA polymerase II elongation factor ELL

      See identical proteins and their annotated locations for NP_031950.2

      Status: VALIDATED

      Source sequence(s)
      AA175554, AK159027, BY252808, BY272058
      Consensus CDS
      CCDS22372.1
      UniProtKB/Swiss-Prot
      O08856
      Related
      ENSMUSP00000091163.6, OTTMUSP00000077747, ENSMUST00000093454.7, OTTMUST00000149925
      Conserved Domains (2) summary
      pfam07303
      Location:497594
      Occludin_ELL; Occludin homology domain
      pfam10390
      Location:6287
      ELL; RNA polymerase II elongation factor ELL

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000074.6 Reference GRCm38.p4 C57BL/6J

      Range
      70539675..70592858
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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