U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    si:dkey-93h22.8 peroxisome proliferator-activated receptor gamma coactivator-related protein 1 [ Kryptolebias marmoratus (mangrove rivulus) ]

    Gene ID: 108236271, updated on 10-Apr-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    si:dkey-93h22.8
    Gene description
    peroxisome proliferator-activated receptor gamma coactivator-related protein 1
    See related
    EnsemblRapid:ENSKMAG00010004906
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Kryptolebias marmoratus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Rivulidae; Kryptolebias
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See si:dkey-93h22.8 in Genome Data Viewer
    Location:
    chromosome: LG3
    Exon count:
    11
    Annotation release Status Assembly LG Location
    102 current ASM164957v2 (GCF_001649575.2) LG3 NC_051432.1 (23606559..23614687, complement)
    101 previous assembly ASM164957v1 (GCF_001649575.1) Unplaced Scaffold NW_016094278.1 (493410..499700, complement)

    Linkage Group LG3 - NC_051432.1Genomic Context describing neighboring genes Neighboring gene arylformamidase Neighboring gene calcium activated nucleotidase 1b Neighboring gene O-GlcNAcase like Neighboring gene LIM-domain binding 1b Neighboring gene armadillo like helical domain containing 3

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nuclear receptor coactivator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription factor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    peroxisome proliferator-activated receptor gamma coactivator-related protein 1
    Names
    peroxisome proliferator activator receptor gamma

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Kryptolebias marmoratus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM164957v2 Primary Assembly

    Genomic

    1. NC_051432.1 Reference ASM164957v2 Primary Assembly

      Range
      23606559..23614687 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_037974639.1 → XP_037830567.1  peroxisome proliferator-activated receptor gamma coactivator-related protein 1

      UniProtKB/TrEMBL
      A0A3Q3BAE6
      Related
      ENSKMAP00010010101.1, ENSKMAT00010010548.1
      Conserved Domains (2) summary
      PTZ00449
      Location:609 → 870
      PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
      cl17169
      Location:1022 → 1112
      RRM_SF; RNA recognition motif (RRM) superfamily
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases