Format

Send to:

Choose Destination
    • Showing Current items.

    Fbxo38 F-box protein 38 [ Mus musculus (house mouse) ]

    Gene ID: 107035, updated on 23-Jun-2021

    Summary

    Official Symbol
    Fbxo38provided by MGI
    Official Full Name
    F-box protein 38provided by MGI
    Primary source
    MGI:MGI:2444639
    See related
    Ensembl:ENSMUSG00000042211
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    SP3; Moka; SP329; AU044865; AW214031; 6030410I24Rik
    Expression
    Ubiquitous expression in CNS E11.5 (RPKM 5.6), testis adult (RPKM 4.9) and 28 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Fbxo38 in Genome Data Viewer
    Location:
    18; 18 E1
    Exon count:
    26
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 18 NC_000084.7 (62637130..62681934, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 18 NC_000084.6 (62504059..62548863, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 18 NC_000084.5 (62663713..62708397, complement)

    Chromosome 18 - NC_000084.7Genomic Context describing neighboring genes Neighboring gene 5 hydroxytryptamine (serotonin) receptor 4 Neighboring gene predicted gene, 36316 Neighboring gene X-linked lymphocyte-regulated 5C pseudogene Neighboring gene serine peptidase inhibitor, Kazal type 10 Neighboring gene serine peptidase inhibitor, Kazal type 7 (putative) Neighboring gene serine peptidase inhibitor, Kazal type 13 Neighboring gene predicted gene, 41751

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in nucleus ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    F-box only protein 38
    Names
    F-box protein modulating KLF7 activity
    modulator of KLF7 activity

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001361088.1NP_001348017.1  F-box only protein 38 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AC131714, AC165083
      Conserved Domains (1) summary
      pfam00646
      Location:3065
      F-box; F-box domain
    2. NM_001361089.1NP_001348018.1  F-box only protein 38 isoform 3

      Status: VALIDATED

      Source sequence(s)
      AC131714, AC165083
    3. NM_001361090.1NP_001348019.1  F-box only protein 38 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AC131714, AC165083
      Conserved Domains (1) summary
      pfam00646
      Location:3265
      F-box; F-box domain
    4. NM_001361091.1NP_001348020.1  F-box only protein 38 isoform 3

      Status: VALIDATED

      Source sequence(s)
      AC131714, AC165083
    5. NM_134136.4NP_598897.2  F-box only protein 38 isoform 4

      See identical proteins and their annotated locations for NP_598897.2

      Status: VALIDATED

      Source sequence(s)
      AC131714, AC165083
      Consensus CDS
      CCDS37841.1
      UniProtKB/Swiss-Prot
      Q8BMI0
      Related
      ENSMUSP00000047541.7, ENSMUST00000048688.8
      Conserved Domains (1) summary
      pfam00646
      Location:3265
      F-box; F-box domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000084.7 Reference GRCm39 C57BL/6J

      Range
      62637130..62681934 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036160927.1XP_036016820.1  F-box only protein 38 isoform X2

      Conserved Domains (1) summary
      pfam00646
      Location:3265
      F-box; F-box domain
    2. XM_036160924.1XP_036016817.1  F-box only protein 38 isoform X1

      Conserved Domains (1) summary
      pfam00646
      Location:3265
      F-box; F-box domain
    3. XM_036160926.1XP_036016819.1  F-box only protein 38 isoform X2

      Conserved Domains (1) summary
      pfam00646
      Location:3265
      F-box; F-box domain
    4. XM_006525501.5XP_006525564.1  F-box only protein 38 isoform X5

      Conserved Domains (1) summary
      pfam00646
      Location:3265
      F-box; F-box domain
    5. XM_036160929.1XP_036016822.1  F-box only protein 38 isoform X4

      Conserved Domains (1) summary
      pfam00646
      Location:3265
      F-box; F-box domain
    6. XM_036160923.1XP_036016816.1  F-box only protein 38 isoform X1

      Conserved Domains (1) summary
      pfam00646
      Location:3265
      F-box; F-box domain
    7. XM_030250266.2XP_030106126.1  F-box only protein 38 isoform X9

    8. XM_036160932.1XP_036016825.1  F-box only protein 38 isoform X7

    9. XM_030250265.2XP_030106125.1  F-box only protein 38 isoform X8

    10. XM_036160930.1XP_036016823.1  F-box only protein 38 isoform X6

    11. XM_036160925.1XP_036016818.1  F-box only protein 38 isoform X1

      Conserved Domains (1) summary
      pfam00646
      Location:3265
      F-box; F-box domain
    12. XM_036160928.1XP_036016821.1  F-box only protein 38 isoform X2

      Conserved Domains (1) summary
      pfam00646
      Location:3265
      F-box; F-box domain
    13. XM_030250263.2XP_030106123.1  F-box only protein 38 isoform X3

      Conserved Domains (1) summary
      pfam00646
      Location:3265
      F-box; F-box domain
    14. XM_030250264.2XP_030106124.1  F-box only protein 38 isoform X3

      Conserved Domains (1) summary
      pfam00646
      Location:3265
      F-box; F-box domain
    Support Center