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    slirp SRA stem-loop interacting RNA binding protein [ Cynoglossus semilaevis (tongue sole) ]

    Gene ID: 103383393, updated on 11-Mar-2024

    Summary

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    Gene symbol
    slirp
    Gene description
    SRA stem-loop interacting RNA binding protein
    See related
    Ensembl:ENSCSEG00000015766
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cynoglossus semilaevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Cynoglossidae; Cynoglossinae; Cynoglossus
    Orthologs
    human zebrafish all
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    102 current Cse_v1.0 (GCF_000523025.1) 1 NC_024307.1 (18785487..18787574, complement)

    Chromosome 1 - NC_024307.1Genomic Context describing neighboring genes Neighboring gene neurexin 3a Neighboring gene aarF domain containing kinase 1 Neighboring gene alkB homolog 1, histone H2A dioxygenase Neighboring gene lipid droplet associated hydrolase Neighboring gene apolipoprotein Ba

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_024307.1 Chromosome 1 Reference Cse_v1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA 3'-UTR binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables poly(G) binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables poly(U) RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in spermatogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    SRA stem-loop-interacting RNA-binding protein, mitochondrial

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cynoglossus semilaevis Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Cse_v1.0 Primary Assembly

    Genomic

    1. NC_024307.1 Reference Cse_v1.0 Primary Assembly

      Range
      18785487..18787574 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008316493.3 → XP_008314715.1  SRA stem-loop-interacting RNA-binding protein, mitochondrial

      UniProtKB/TrEMBL
      A0A3P8WGH1
      Related
      ENSCSEP00000024676.1, ENSCSET00000025008.1
      Conserved Domains (2) summary
      COG0724
      Location:12 → 94
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd12242
      Location:12 → 81
      RRM_SLIRP; RNA recognition motif found in SRA stem-loop-interacting RNA-binding protein (SLIRP) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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