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    rtca RNA 3'-terminal phosphate cyclase [ Stegastes partitus (bicolor damselfish) ]

    Gene ID: 103357343, updated on 11-Mar-2024

    Summary

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    Gene symbol
    rtca
    Gene description
    RNA 3'-terminal phosphate cyclase
    See related
    Ensembl:ENSSPAG00000011938
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Stegastes partitus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Pomacentridae; Stegastes
    Orthologs
    human zebrafish all
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    Genomic context

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    See rtca in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    100 current Stegastes_partitus-1.0.2 (GCF_000690725.1) Unplaced Scaffold NW_007577979.1 (423296..432156)

    NW_007577979.1Genomic Context describing neighboring genes Neighboring gene UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 6 Neighboring gene origin recognition complex, subunit 1 Neighboring gene interferon-induced protein with tetratricopeptide repeats 1B-like Neighboring gene protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_007577979 unplaced scaffold reference Stegastes_partitus-1.0.2

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA-3'-phosphate cyclase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in RNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    RNA 3'-terminal phosphate cyclase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Stegastes partitus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Stegastes_partitus-1.0.2

    Genomic

    1. NW_007577979.1 Reference Stegastes_partitus-1.0.2

      Range
      423296..432156
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008281866.1 → XP_008280088.1  RNA 3'-terminal phosphate cyclase

      UniProtKB/TrEMBL
      A0A3B5A697
      Related
      ENSSPAP00000015846.1, ENSSPAT00000016101.1
      Conserved Domains (2) summary
      cd00874
      Location:10 → 341
      RNA_Cyclase_Class_II; RNA 3' phosphate cyclase domain (class II). These proteins function as RNA cyclase to catalyze the ATP-dependent conversion of 3'-phosphate to a 2'.3'-cyclic phosphodiester at the end of RNA molecule. A conserved catalytic histidine residue is found in ...
      pfam01137
      Location:14 → 339
      RTC; RNA 3'-terminal phosphate cyclase
    Nucleotide Protein
    Heading Accession and Version

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