U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    UPF2 UPF2 regulator of nonsense mediated mRNA decay [ Ficedula albicollis (Collared flycatcher) ]

    Gene ID: 101811115, updated on 8-Mar-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    UPF2
    Gene description
    UPF2 regulator of nonsense mediated mRNA decay
    See related
    Ensembl:ENSFALG00000001889
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Ficedula albicollis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Muscicapidae; Ficedula
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See UPF2 in Genome Data Viewer
    Location:
    chromosome: 1A
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    101 current FicAlb1.5 (GCF_000247815.1) 1A NC_021672.1 (6306790..6355105, complement)

    Chromosome 1A - NC_021672.1Genomic Context describing neighboring genes Neighboring gene enoyl-CoA hydratase domain containing 3 Neighboring gene proline and serine rich 2 Neighboring gene dehydrogenase E1 and transketolase domain containing 1 Neighboring gene SEC61 translocon subunit alpha 2

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_021672.1 Chromosome 1A Reference FicAlb1.5 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of exon-exon junction complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    regulator of nonsense transcripts 2
    Names
    UPF2 regulator of nonsense transcripts homolog

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Ficedula albicollis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference FicAlb1.5 Primary Assembly

    Genomic

    1. NC_021672.1 Reference FicAlb1.5 Primary Assembly

      Range
      6306790..6355105 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_016304952.1 → XP_016160438.1  regulator of nonsense transcripts 2

      UniProtKB/TrEMBL
      A0A803VBX0, U3JGR2
      Related
      ENSFALP00000020226.1, ENSFALT00000032578.1
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.