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    MSANTD7 Myb/SANT DNA binding domain containing 7 [ Homo sapiens (human) ]

    Gene ID: 100421372, updated on 17-Sep-2024

    Summary

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    Official Symbol
    MSANTD7provided by HGNC
    Official Full Name
    Myb/SANT DNA binding domain containing 7provided by HGNC
    Primary source
    HGNC:HGNC:56248
    See related
    Ensembl:ENSG00000284024
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Orthologs
    mouse all
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    Genomic context

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    See MSANTD7 in Genome Data Viewer
    Location:
    10p13
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (14838306..14846999)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (14852271..14860964)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (14880305..14888998)

    Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene family with sequence similarity 107 member B Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:14779811-14780332 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3082 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3083 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3084 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:14793464-14794381 Neighboring gene ribosomal protein SA pseudogene 7 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2163 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3085 Neighboring gene cerebral dopamine neurotrophic factor Neighboring gene heat shock protein family A (Hsp70) member 14 Neighboring gene SUV39H2 divergent transcript Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2164 Neighboring gene SUV39H2 histone lysine methyltransferase Neighboring gene DNA cross-link repair 1C

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Homology

    General protein information

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    Preferred Names
    zinc finger and SCAN domain containing 29

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001378785.1 → NP_001365714.1  zinc finger and SCAN domain containing 29 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AC069544
      Consensus CDS
      CCDS91215.1
      UniProtKB/Swiss-Prot
      A0A1W2PQ72
      Related
      ENSP00000491568.1, ENST00000640019.3
      Conserved Domains (1) summary
      pfam13837
      Location:11 → 94
      Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain

    2. NM_001378790.1 → NP_001365719.1  zinc finger and SCAN domain containing 29 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AC069544

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

      Range
      14838306..14846999
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060934.1 Alternate T2T-CHM13v2.0

      Range
      14852271..14860964
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NG_025474.1: Suppressed sequence

      Description
      NG_025474.1: This RefSeq was removed because it is now thought that this gene does encode a protein.
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Other Literature Sources
    Molecular Biology Databases
    Research Materials