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    ETDB embryonic testis differentiation homolog B [ Homo sapiens (human) ]

    Gene ID: 100129515, updated on 8-Mar-2024

    Summary

    Official Symbol
    ETDBprovided by HGNC
    Official Full Name
    embryonic testis differentiation homolog Bprovided by HGNC
    Primary source
    HGNC:HGNC:44269
    See related
    Ensembl:ENSG00000224107 AllianceGenome:HGNC:44269
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    ETDA; LINC00633
    Expression
    Restricted expression toward testis (RPKM 5.6) See more
    Orthologs
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    Genomic context

    See ETDB in Genome Data Viewer
    Location:
    Xq26.3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (135118955..135120526, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (133444747..133446318, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (134252881..134254454, complement)

    Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene nucleolin pseudogene 2 Neighboring gene small integral membrane protein 10 like 2B Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 21018 Neighboring gene Sharpr-MPRA regulatory region 8062 Neighboring gene SMIM10L2B antisense RNA 1 Neighboring gene zinc finger protein 449 pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    General protein information

    Preferred Names
    embryonic testis differentiation protein homolog B
    Names
    Embryonic testis differentiation protein homolog A
    Embryonic testis differentiation protein homolog B-like
    long intergenic non-protein coding RNA 633

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001355519.1NP_001342448.1  embryonic testis differentiation protein homolog B

      Status: VALIDATED

      Source sequence(s)
      AI015085, AY730280, BX106414
      Consensus CDS
      CCDS87781.1
      UniProtKB/Swiss-Prot
      P0DPP9, Q3ZM63
      Related
      ENSP00000490943.1, ENST00000423661.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

      Range
      135118955..135120526 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024452315.2XP_024308083.1  embryonic testis differentiation protein homolog B isoform X1

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060947.1 Alternate T2T-CHM13v2.0

      Range
      133444747..133446318 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054326272.1XP_054182247.1  embryonic testis differentiation protein homolog B isoform X1