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    atp1b4 ATPase Na+/K+ transporting subunit beta 4 [ Danio rerio (zebrafish) ]

    Gene ID: 100037383, updated on 27-Mar-2024

    Summary

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    Official Symbol
    atp1b4provided by ZNC
    Official Full Name
    ATPase Na+/K+ transporting subunit beta 4provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-070412-1
    See related
    Ensembl:ENSDARG00000053262 AllianceGenome:ZFIN:ZDB-GENE-070412-1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Predicted to be involved in regulation of transcription, DNA-templated. Predicted to act upstream of or within potassium ion transport and sodium ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of sodium:potassium-exchanging ATPase complex. Predicted to be active in nuclear inner membrane. Orthologous to human ATP1B4 (ATPase Na+/K+ transporting family member beta 4). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 14
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 14 NC_007125.7 (33458276..33469953)
    105 previous assembly GRCz10 (GCF_000002035.5) 14 NC_007125.6 (33117984..33129639)

    Chromosome 14 - NC_007125.7Genomic Context describing neighboring genes Neighboring gene zinc finger and BTB domain containing 33 Neighboring gene transmembrane protein 255A Neighboring gene lysosomal-associated membrane protein 2 Neighboring gene cullin 4B

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Recurrent gene loss correlates with the evolution of stomach phenotypes in gnathostome history. Castro LF, et al. Proc Biol Sci, 2014 Jan 22. PMID 24307675, Free PMC Article
    2. Chaperone-Mediated Autophagy in the Light of Evolution: Insight from Fish. Lescat L, et al. Mol Biol Evol, 2020 Oct 1. PMID 32437540
    3. A single cell transcriptome atlas of the developing zebrafish hindbrain. Tambalo M, et al. Development, 2020 Mar 16. PMID 32094115, Free PMC Article
    4. Characterization of Intracellular Peptides from Zebrafish (Danio rerio) Brain. Teixeira CMM, et al. Zebrafish, 2019 Jun. PMID 31017557
    5. Identification of target genes downstream of semaphorin6A/PlexinA2 signaling in zebrafish. Emerson SE, et al. Dev Dyn, 2017 Jul. PMID 28440030, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Process Evidence Code Pubs
    acts_upstream_of_or_within monoatomic ion transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within potassium ion transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in regulation of DNA-templated transcription IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    acts_upstream_of_or_within sodium ion transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in nuclear inner membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of sodium:potassium-exchanging ATPase complex IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    protein ATP1B4
    Names
    ATPase, Na+/K+ transporting, beta 4 polypeptide

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007125.7 Reference GRCz11 Primary Assembly

      Range
      33458276..33469953
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002664424.6 → XP_002664470.2  protein ATP1B4

      UniProtKB/TrEMBL
      A0A8M1RRE9, E7F9R1
      Related
      ENSDARP00000069762.5, ENSDART00000075278.6
      Conserved Domains (1) summary
      pfam00287
      Location:71 → 340
      Na_K-ATPase; Sodium / potassium ATPase beta chain
    Nucleotide Protein Strain
    Heading Accession and Version

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