Format

Send to:

Choose Destination

Hnrnpf heterogeneous nuclear ribonucleoprotein F [ Mus musculus (house mouse) ]

Gene ID: 98758, updated on 5-Aug-2018

Summary

Official Symbol
Hnrnpfprovided by MGI
Official Full Name
heterogeneous nuclear ribonucleoprotein Fprovided by MGI
Primary source
MGI:MGI:2138741
See related
Ensembl:ENSMUSG00000042079 Vega:OTTMUSG00000042359
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Hnrpf; AA407306; 4833420I20Rik
Expression
Ubiquitous expression in liver E14 (RPKM 143.4), liver E14.5 (RPKM 122.6) and 28 other tissues See more
Orthologs

Genomic context

See Hnrnpf in Genome Data Viewer
Location:
6; 6 F1
Exon count:
7
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 6 NC_000072.6 (117900340..117925622)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 6 NC_000072.5 (117850358..117875640)

Chromosome 6 - NC_000072.6Genomic Context describing neighboring genes Neighboring gene zinc finger protein 239 Neighboring gene predicted gene, 38882 Neighboring gene predicted gene, 38883 Neighboring gene RIKEN cDNA 4933440N22 gene Neighboring gene FXYD domain-containing ion transport regulator 4 Neighboring gene predicted gene, 38884 Neighboring gene Lasp1 pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Pathways from BioSystems

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC36971, MGC101981

Gene Ontology Provided by MGI

Function Evidence Code Pubs
RNA binding IEA
Inferred from Electronic Annotation
more info
 
TBP-class protein binding ISO
Inferred from Sequence Orthology
more info
 
nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 
single-stranded RNA binding ISO
Inferred from Sequence Orthology
more info
 
transcription factor binding ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
RNA splicing IEA
Inferred from Electronic Annotation
more info
 
mRNA processing IEA
Inferred from Electronic Annotation
more info
 
regulation of RNA splicing ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
catalytic step 2 spliceosome ISO
Inferred from Sequence Orthology
more info
 
cytosol ISO
Inferred from Sequence Orthology
more info
 
nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
nucleus ISO
Inferred from Sequence Orthology
more info
 
spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
heterogeneous nuclear ribonucleoprotein F
Names
hnRNP F

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001166427.1NP_001159899.1  heterogeneous nuclear ribonucleoprotein F

    See identical proteins and their annotated locations for NP_001159899.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR, compared to variant 1. Variants 1-7 encode the same protein.
    Source sequence(s)
    BC047346, CJ094336, CX218091
    Consensus CDS
    CCDS20467.1
    UniProtKB/Swiss-Prot
    Q9Z2X1
    Related
    ENSMUSP00000137632.1, ENSMUST00000180020.7
    Conserved Domains (4) summary
    cd12506
    Location:289363
    RRM3_hnRNPH_CRSF1_like; RNA recognition motif 3 in heterogeneous nuclear ribonucleoprotein hnRNP H protein family, G-rich sequence factor 1 (GRSF-1) and similar proteins
    cd12729
    Location:1088
    RRM1_hnRNPH_hnRNPH2_hnRNPF; RNA recognition motif 1 in heterogeneous nuclear ribonucleoprotein hnRNP H , hnRNP H2, hnRNP F and similar proteins
    pfam08080
    Location:255290
    zf-RNPHF; RNPHF zinc finger
    cl17169
    Location:93188
    RRM_SF; RNA recognition motif (RRM) superfamily
  2. NM_001166428.1NP_001159900.1  heterogeneous nuclear ribonucleoprotein F

    See identical proteins and their annotated locations for NP_001159900.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) differs in the 5' UTR, compared to variant 1. Variants 1-7 encode the same protein.
    Source sequence(s)
    BC047346, BY774552, CA539382, CJ054614, CX218091
    Consensus CDS
    CCDS20467.1
    UniProtKB/Swiss-Prot
    Q9Z2X1
    Conserved Domains (4) summary
    cd12506
    Location:289363
    RRM3_hnRNPH_CRSF1_like; RNA recognition motif 3 in heterogeneous nuclear ribonucleoprotein hnRNP H protein family, G-rich sequence factor 1 (GRSF-1) and similar proteins
    cd12729
    Location:1088
    RRM1_hnRNPH_hnRNPH2_hnRNPF; RNA recognition motif 1 in heterogeneous nuclear ribonucleoprotein hnRNP H , hnRNP H2, hnRNP F and similar proteins
    pfam08080
    Location:255290
    zf-RNPHF; RNPHF zinc finger
    cl17169
    Location:93188
    RRM_SF; RNA recognition motif (RRM) superfamily
  3. NM_001166429.1NP_001159901.1  heterogeneous nuclear ribonucleoprotein F

    See identical proteins and their annotated locations for NP_001159901.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) differs in the 5' UTR, compared to variant 1. Variants 1-7 encode the same protein.
    Source sequence(s)
    BC047346, BY774552, CK389060, CX218091
    Consensus CDS
    CCDS20467.1
    UniProtKB/Swiss-Prot
    Q9Z2X1
    Conserved Domains (4) summary
    cd12506
    Location:289363
    RRM3_hnRNPH_CRSF1_like; RNA recognition motif 3 in heterogeneous nuclear ribonucleoprotein hnRNP H protein family, G-rich sequence factor 1 (GRSF-1) and similar proteins
    cd12729
    Location:1088
    RRM1_hnRNPH_hnRNPH2_hnRNPF; RNA recognition motif 1 in heterogeneous nuclear ribonucleoprotein hnRNP H , hnRNP H2, hnRNP F and similar proteins
    pfam08080
    Location:255290
    zf-RNPHF; RNPHF zinc finger
    cl17169
    Location:93188
    RRM_SF; RNA recognition motif (RRM) superfamily
  4. NM_001166430.1NP_001159902.1  heterogeneous nuclear ribonucleoprotein F

    See identical proteins and their annotated locations for NP_001159902.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (5) differs in the 5' UTR, compared to variant 1. Variants 1-7 encode the same protein.
    Source sequence(s)
    AU079872, BC047346, CJ048596, CJ169112, CX218091
    Consensus CDS
    CCDS20467.1
    UniProtKB/Swiss-Prot
    Q9Z2X1
    Conserved Domains (4) summary
    cd12506
    Location:289363
    RRM3_hnRNPH_CRSF1_like; RNA recognition motif 3 in heterogeneous nuclear ribonucleoprotein hnRNP H protein family, G-rich sequence factor 1 (GRSF-1) and similar proteins
    cd12729
    Location:1088
    RRM1_hnRNPH_hnRNPH2_hnRNPF; RNA recognition motif 1 in heterogeneous nuclear ribonucleoprotein hnRNP H , hnRNP H2, hnRNP F and similar proteins
    pfam08080
    Location:255290
    zf-RNPHF; RNPHF zinc finger
    cl17169
    Location:93188
    RRM_SF; RNA recognition motif (RRM) superfamily
  5. NM_001166431.1NP_001159903.1  heterogeneous nuclear ribonucleoprotein F

    See identical proteins and their annotated locations for NP_001159903.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (6) differs in the 5' UTR, compared to variant 1. Variants 1-7 encode the same protein.
    Source sequence(s)
    BC047346, CJ048596, CJ094704, CX218091
    Consensus CDS
    CCDS20467.1
    UniProtKB/Swiss-Prot
    Q9Z2X1
    Related
    ENSMUSP00000130023.2, OTTMUSP00000062538, ENSMUST00000163168.8, OTTMUST00000111634
    Conserved Domains (4) summary
    cd12506
    Location:289363
    RRM3_hnRNPH_CRSF1_like; RNA recognition motif 3 in heterogeneous nuclear ribonucleoprotein hnRNP H protein family, G-rich sequence factor 1 (GRSF-1) and similar proteins
    cd12729
    Location:1088
    RRM1_hnRNPH_hnRNPH2_hnRNPF; RNA recognition motif 1 in heterogeneous nuclear ribonucleoprotein hnRNP H , hnRNP H2, hnRNP F and similar proteins
    pfam08080
    Location:255290
    zf-RNPHF; RNPHF zinc finger
    cl17169
    Location:93188
    RRM_SF; RNA recognition motif (RRM) superfamily
  6. NM_001166432.1NP_001159904.1  heterogeneous nuclear ribonucleoprotein F

    See identical proteins and their annotated locations for NP_001159904.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (7) differs in the 5' UTR, compared to variant 1. Variants 1-7 encode the same protein.
    Source sequence(s)
    BC047346, CF163622, CX218091
    Consensus CDS
    CCDS20467.1
    UniProtKB/Swiss-Prot
    Q9Z2X1
    Related
    ENSMUSP00000126817.1, ENSMUST00000167182.7
    Conserved Domains (4) summary
    cd12506
    Location:289363
    RRM3_hnRNPH_CRSF1_like; RNA recognition motif 3 in heterogeneous nuclear ribonucleoprotein hnRNP H protein family, G-rich sequence factor 1 (GRSF-1) and similar proteins
    cd12729
    Location:1088
    RRM1_hnRNPH_hnRNPH2_hnRNPF; RNA recognition motif 1 in heterogeneous nuclear ribonucleoprotein hnRNP H , hnRNP H2, hnRNP F and similar proteins
    pfam08080
    Location:255290
    zf-RNPHF; RNPHF zinc finger
    cl17169
    Location:93188
    RRM_SF; RNA recognition motif (RRM) superfamily
  7. NM_133834.2NP_598595.1  heterogeneous nuclear ribonucleoprotein F

    See identical proteins and their annotated locations for NP_598595.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the shortest transcript. Variants 1-7 encode the same protein.
    Source sequence(s)
    AK076478, BC047346, CJ048596, CX218091
    Consensus CDS
    CCDS20467.1
    UniProtKB/Swiss-Prot
    Q9Z2X1
    Related
    ENSMUSP00000045048.7, OTTMUSP00000062536, ENSMUST00000035493.13, OTTMUST00000111632
    Conserved Domains (4) summary
    cd12506
    Location:289363
    RRM3_hnRNPH_CRSF1_like; RNA recognition motif 3 in heterogeneous nuclear ribonucleoprotein hnRNP H protein family, G-rich sequence factor 1 (GRSF-1) and similar proteins
    cd12729
    Location:1088
    RRM1_hnRNPH_hnRNPH2_hnRNPF; RNA recognition motif 1 in heterogeneous nuclear ribonucleoprotein hnRNP H , hnRNP H2, hnRNP F and similar proteins
    pfam08080
    Location:255290
    zf-RNPHF; RNPHF zinc finger
    cl17169
    Location:93188
    RRM_SF; RNA recognition motif (RRM) superfamily

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000072.6 Reference GRCm38.p4 C57BL/6J

    Range
    117900340..117925622
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006506829.3XP_006506892.1  heterogeneous nuclear ribonucleoprotein F isoform X1

    See identical proteins and their annotated locations for XP_006506892.1

    UniProtKB/Swiss-Prot
    Q9Z2X1
    Conserved Domains (4) summary
    cd12506
    Location:289363
    RRM3_hnRNPH_CRSF1_like; RNA recognition motif 3 in heterogeneous nuclear ribonucleoprotein hnRNP H protein family, G-rich sequence factor 1 (GRSF-1) and similar proteins
    cd12729
    Location:1088
    RRM1_hnRNPH_hnRNPH2_hnRNPF; RNA recognition motif 1 in heterogeneous nuclear ribonucleoprotein hnRNP H , hnRNP H2, hnRNP F and similar proteins
    pfam08080
    Location:255290
    zf-RNPHF; RNPHF zinc finger
    cl17169
    Location:93188
    RRM_SF; RNA recognition motif (RRM) superfamily
Support Center