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ATG13 autophagy related 13 [ Homo sapiens (human) ]

Gene ID: 9776, updated on 8-Dec-2018

Summary

Official Symbol
ATG13provided by HGNC
Official Full Name
autophagy related 13provided by HGNC
Primary source
HGNC:HGNC:29091
See related
Ensembl:ENSG00000175224 MIM:615088
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
KIAA0652; PARATARG8
Summary
The protein encoded by this gene is an autophagy factor and a target of the TOR kinase signaling pathway. The encoded protein is essential for autophagosome formation and mitophagy. [provided by RefSeq, Oct 2016]
Expression
Ubiquitous expression in testis (RPKM 17.3), brain (RPKM 12.2) and 25 other tissues See more
Orthologs

Genomic context

See ATG13 in Genome Data Viewer
Location:
11p11.2
Exon count:
26
Annotation release Status Assembly Chr Location
109 current GRCh38.p12 (GCF_000001405.38) 11 NC_000011.10 (46617276..46676019)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (46638826..46697569)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene autophagy and beclin 1 regulator 1 Neighboring gene ribosomal protein S10 pseudogene 19 Neighboring gene microRNA 3160-1 Neighboring gene microRNA 3160-2 Neighboring gene harbinger transposase derived 1 Neighboring gene Rho GTPase activating protein 1 Neighboring gene zinc finger protein 408

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Pathways from BioSystems

  • Autophagy - animal, organism-specific biosystem (from KEGG)
    Autophagy - animal, organism-specific biosystemAutophagy (or macroautophagy) is a cellular catabolic pathway involving in protein degradation, organelle turnover, and non-selective breakdown of cytoplasmic components, which is evolutionarily cons...
  • Autophagy - animal, conserved biosystem (from KEGG)
    Autophagy - animal, conserved biosystemAutophagy (or macroautophagy) is a cellular catabolic pathway involving in protein degradation, organelle turnover, and non-selective breakdown of cytoplasmic components, which is evolutionarily cons...
  • Autophagy - other, organism-specific biosystem (from KEGG)
    Autophagy - other, organism-specific biosystemAutophagy is a degradative pathway for the removal of cytoplasmic materials in eukaryotic cells, and is characterized by the formation of a double-membrane structure called the autophagosome, either ...
  • Autophagy - other, conserved biosystem (from KEGG)
    Autophagy - other, conserved biosystemAutophagy is a degradative pathway for the removal of cytoplasmic materials in eukaryotic cells, and is characterized by the formation of a double-membrane structure called the autophagosome, either ...
  • Cellular responses to stress, organism-specific biosystem (from REACTOME)
    Cellular responses to stress, organism-specific biosystemCells are subject to external molecular and physical stresses such as foreign molecules that perturb metabolic or signaling processes, and changes in temperature or pH. The ability of cells and tissu...
  • Longevity regulating pathway, organism-specific biosystem (from KEGG)
    Longevity regulating pathway, organism-specific biosystemRegulation of longevity depends on genetic and environmental factors. Caloric restriction (CR), that is limiting food intake, is recognized in mammals as the best characterized and most reproducible ...
  • Macroautophagy, organism-specific biosystem (from REACTOME)
    Macroautophagy, organism-specific biosystemMacroautophagy (hereafter referred to as autophagy) acts as a buffer against starvation by liberating building materials and energy sources from cellular components. It has additional roles in embryo...
  • PI3K-AKT-mTOR signaling pathway and therapeutic opportunities, organism-specific biosystem (from WikiPathways)
    PI3K-AKT-mTOR signaling pathway and therapeutic opportunities, organism-specific biosystemThis pathway is based on figure 1 from Merritt et al. (See Bibliography). The PI3K-AKT-mTOR signaling pathway has been shown to have a significant correlation with the development of castration-resis...
  • Senescence and Autophagy in Cancer, organism-specific biosystem (from WikiPathways)
    Senescence and Autophagy in Cancer, organism-specific biosystemSenescense and Autophagy Pathways in Cancer
  • mTOR signaling pathway, organism-specific biosystem (from Pathway Interaction Database)
    mTOR signaling pathway, organism-specific biosystem
    mTOR signaling pathway

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ20698, KIAA0652

Gene Ontology Provided by GOA

Function Evidence Code Pubs
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
protein kinase binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
protein kinase binding IPI
Inferred from Physical Interaction
more info
PubMed 
protein kinase regulator activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
activation of protein kinase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
autophagosome assembly IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
autophagosome assembly IMP
Inferred from Mutant Phenotype
more info
PubMed 
autophagy of mitochondrion IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
macroautophagy IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
macroautophagy TAS
Traceable Author Statement
more info
 
mitophagy IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
piecemeal microautophagy of the nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
positive regulation of protein targeting to mitochondrion HMP PubMed 
protein localization to phagophore assembly site IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
regulation of macroautophagy TAS
Traceable Author Statement
more info
 
response to mitochondrial depolarisation IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
Atg1/ULK1 kinase complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Atg1/ULK1 kinase complex IPI
Inferred from Physical Interaction
more info
PubMed 
cytosol IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cytosol TAS
Traceable Author Statement
more info
 
endoplasmic reticulum membrane TAS
Traceable Author Statement
more info
 
extrinsic component of membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
mitochondrion IDA
Inferred from Direct Assay
more info
PubMed 
phagophore assembly site IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
phagophore assembly site ISS
Inferred from Sequence or Structural Similarity
more info
 

General protein information

Preferred Names
autophagy-related protein 13
Names
ATG13 autophagy related 13 homolog

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_051811.1 RefSeqGene

    Range
    5001..63742
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001142673.2NP_001136145.1  autophagy-related protein 13 isoform c

    See identical proteins and their annotated locations for NP_001136145.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (1) includes an alternate exon in the 5' UTR and lacks an exon in the coding region compared to variant 3. The resulting isoform (c, also known as isoform 1) is shorter but has the same N- and C- termini compared to isoform a. Variants 1, 4 and 15-28 all encode the same isoform (c).
    Source sequence(s)
    AC115088, AK289641, BC002378, CD675643, DA195671
    Consensus CDS
    CCDS44582.1
    UniProtKB/Swiss-Prot
    O75143
    UniProtKB/TrEMBL
    A8K0S6
    Conserved Domains (1) summary
    pfam10033
    Location:19195
    ATG13; Autophagy-related protein 13
  2. NM_001205119.1NP_001192048.1  autophagy-related protein 13 isoform a

    See identical proteins and their annotated locations for NP_001192048.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (3) encodes the longest isoform (a, also known as isoform 3). Variants 3 and 7-12 all encode the same isoform (a).
    Source sequence(s)
    AC115088, AK223603, BC002378, DA195671
    Consensus CDS
    CCDS55760.1
    UniProtKB/Swiss-Prot
    O75143
    Related
    ENSP00000432412.1, ENST00000528494.5
    Conserved Domains (1) summary
    pfam10033
    Location:19195
    ATG13; Autophagy-related protein 13
  3. NM_001205120.1NP_001192049.1  autophagy-related protein 13 isoform c

    See identical proteins and their annotated locations for NP_001192049.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (4) lacks an exon in the coding region compared to variant 3. The resulting isoform (c, also known as isoform 1) is shorter but has the same N- and C-termini compared to isoform a. Variants 1, 4, and 15-28 all encode the same isoform (c).
    Source sequence(s)
    AB014552, AC115088, DA195671
    Consensus CDS
    CCDS44582.1
    UniProtKB/Swiss-Prot
    O75143
    Related
    ENSP00000352500.4, ENST00000359513.8
    Conserved Domains (1) summary
    pfam10033
    Location:19195
    ATG13; Autophagy-related protein 13
  4. NM_001205121.1NP_001192050.1  autophagy-related protein 13 isoform f

    See identical proteins and their annotated locations for NP_001192050.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (5) includes an alternate exon in the 5' UTR and lacks two exons in the coding region compared to variant 3. The resulting isoform (f, also known as isoform 2) is shorter but has the same N- and C- termini compared to isoform a. Variants 2, 5, and 36-45 all encode the same isoform (f).
    Source sequence(s)
    AB014552, AC115088, AK023867, DA195671
    Consensus CDS
    CCDS7921.1
    UniProtKB/Swiss-Prot
    O75143
    Related
    ENSP00000433756.1, ENST00000529655.5
    Conserved Domains (1) summary
    pfam10033
    Location:19195
    ATG13; Autophagy-related protein 13
  5. NM_001205122.1NP_001192051.1  autophagy-related protein 13 isoform h

    See identical proteins and their annotated locations for NP_001192051.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (6) has multiple differences compared to variant 3. These differences result in a distinct 5' UTR and cause translation initiation at a downstream start codon compared to variant 3. The encoded isoform (h, also known as isoform 4) has a distinct N-terminus and is shorter than isoform a.
    Source sequence(s)
    AB014552, AC115088, AK294110, DA195671
    Consensus CDS
    CCDS55761.1
    UniProtKB/Swiss-Prot
    O75143
    Related
    ENSP00000434390.1, ENST00000530500.5
  6. NM_001346311.1NP_001333240.1  autophagy-related protein 13 isoform a

    Status: REVIEWED

    Description
    Transcript Variant: This variant (7), as well as variants 3 and 8-12, encodes isoform a.
    Source sequence(s)
    AC115088, AC127035
    Consensus CDS
    CCDS55760.1
    UniProtKB/Swiss-Prot
    O75143
  7. NM_001346312.1NP_001333241.1  autophagy-related protein 13 isoform a

    Status: REVIEWED

    Description
    Transcript Variant: This variant (8), as well as variants 3, 7, and 9-12, encodes isoform a
    Source sequence(s)
    AC115088, AC127035
    Consensus CDS
    CCDS55760.1
    UniProtKB/Swiss-Prot
    O75143
  8. NM_001346313.1NP_001333242.1  autophagy-related protein 13 isoform a

    Status: REVIEWED

    Description
    Transcript Variant: This variant (9), as well as variants 3, 7-8, and 10-12, encodes isoform a.
    Source sequence(s)
    AC115088, AC127035
    Consensus CDS
    CCDS55760.1
    UniProtKB/Swiss-Prot
    O75143
  9. NM_001346314.1NP_001333243.1  autophagy-related protein 13 isoform a

    Status: REVIEWED

    Description
    Transcript Variant: This variant (10), as well as variants 3, 7-9, and 11-12, encodes isoform a.
    Source sequence(s)
    AC115088, AC127035
    Consensus CDS
    CCDS55760.1
    UniProtKB/Swiss-Prot
    O75143
  10. NM_001346315.1NP_001333244.1  autophagy-related protein 13 isoform a

    Status: REVIEWED

    Description
    Transcript Variant: This variant (11), as well as variants 3, 7-10, and 12, encodes isoform a.
    Source sequence(s)
    AC115088, AC127035
    Consensus CDS
    CCDS55760.1
    UniProtKB/Swiss-Prot
    O75143
  11. NM_001346316.1NP_001333245.1  autophagy-related protein 13 isoform a

    Status: REVIEWED

    Description
    Transcript Variant: This variant (12), as well as variants 3 and 7-11, encodes isoform a.
    Source sequence(s)
    AC115088, AC127035
    Consensus CDS
    CCDS55760.1
    UniProtKB/Swiss-Prot
    O75143
  12. NM_001346317.1NP_001333246.1  autophagy-related protein 13 isoform b

    Status: REVIEWED

    Description
    Transcript Variant: This variant (13), as well as variant 14, encodes isoform b.
    Source sequence(s)
    AC115088, AC127035
  13. NM_001346318.1NP_001333247.1  autophagy-related protein 13 isoform b

    Status: REVIEWED

    Description
    Transcript Variant: This variant (14), as well as variant 13, encodes isoform b.
    Source sequence(s)
    AC115088, AC127035
  14. NM_001346319.1NP_001333248.1  autophagy-related protein 13 isoform c

    Status: REVIEWED

    Description
    Transcript Variant: This variant (15), as well as variants 1, 4, and 16-28, encodes isoform c.
    Source sequence(s)
    AC115088, AC127035
    Consensus CDS
    CCDS44582.1
    UniProtKB/Swiss-Prot
    O75143
  15. NM_001346320.1NP_001333249.1  autophagy-related protein 13 isoform c

    Status: REVIEWED

    Description
    Transcript Variant: This variant (16), as well as variants 1, 4, 15, and 17-28, encodes isoform c.
    Source sequence(s)
    AC115088, AC127035
    Consensus CDS
    CCDS44582.1
    UniProtKB/Swiss-Prot
    O75143
  16. NM_001346321.1NP_001333250.1  autophagy-related protein 13 isoform c

    Status: REVIEWED

    Description
    Transcript Variant: This variant (17), as well as variants 1, 4, 15-16, and 18-28, encodes isoform c.
    Source sequence(s)
    AC115088, AC127035
    Consensus CDS
    CCDS44582.1
    UniProtKB/Swiss-Prot
    O75143
  17. NM_001346322.1NP_001333251.1  autophagy-related protein 13 isoform c

    Status: REVIEWED

    Description
    Transcript Variant: This variant (18), as well as variants 1, 4, 15-17, and 19-28, encodes isoform c.
    Source sequence(s)
    AC115088, AC127035
    Consensus CDS
    CCDS44582.1
    UniProtKB/Swiss-Prot
    O75143
  18. NM_001346323.1NP_001333252.1  autophagy-related protein 13 isoform c

    Status: REVIEWED

    Description
    Transcript Variant: This variant (19), as well as variants 1, 4, 15-18, and 20-28, encodes isoform c.
    Source sequence(s)
    AC115088, AC127035
    Consensus CDS
    CCDS44582.1
    UniProtKB/Swiss-Prot
    O75143
  19. NM_001346324.1NP_001333253.1  autophagy-related protein 13 isoform c

    Status: REVIEWED

    Description
    Transcript Variant: This variant (20), as well as variants 1, 4, 15-19, and 21-28, encodes isoform c.
    Source sequence(s)
    AC115088, AC127035
    Consensus CDS
    CCDS44582.1
    UniProtKB/Swiss-Prot
    O75143
    Related
    ENSP00000431974.1, ENST00000526508.5
  20. NM_001346325.1NP_001333254.1  autophagy-related protein 13 isoform c

    Status: REVIEWED

    Description
    Transcript Variant: This variant (21), as well as variants 1, 4, 15-20, and 22-28, encodes isoform c.
    Source sequence(s)
    AC115088, AC127035
    Consensus CDS
    CCDS44582.1
    UniProtKB/Swiss-Prot
    O75143
  21. NM_001346326.1NP_001333255.1  autophagy-related protein 13 isoform c

    Status: REVIEWED

    Description
    Transcript Variant: This variant (22), as well as variants 1, 4, 15-21, and 23-28, encodes isoform c.
    Source sequence(s)
    AC115088, AC127035
    Consensus CDS
    CCDS44582.1
    UniProtKB/Swiss-Prot
    O75143
  22. NM_001346327.1NP_001333256.1  autophagy-related protein 13 isoform c

    Status: REVIEWED

    Description
    Transcript Variant: This variant (23), as well as variants 1, 4, 15-22, and 24-28, encodes isoform c.
    Source sequence(s)
    AC115088, AC127035
    Consensus CDS
    CCDS44582.1
    UniProtKB/Swiss-Prot
    O75143
  23. NM_001346328.1NP_001333257.1  autophagy-related protein 13 isoform c

    Status: REVIEWED

    Description
    Transcript Variant: This variant (24), as well as variants 1, 4, 15-23, and 25-28, encodes isoform c.
    Source sequence(s)
    AC115088, AC127035
    Consensus CDS
    CCDS44582.1
    UniProtKB/Swiss-Prot
    O75143
  24. NM_001346329.1NP_001333258.1  autophagy-related protein 13 isoform c

    Status: REVIEWED

    Description
    Transcript Variant: This variant (25), as well as variants 1, 4, 15-24, and 26-28, encodes isoform c.
    Source sequence(s)
    AC115088, AC127035
    Consensus CDS
    CCDS44582.1
    UniProtKB/Swiss-Prot
    O75143
  25. NM_001346330.1NP_001333259.1  autophagy-related protein 13 isoform c

    Status: REVIEWED

    Description
    Transcript Variant: This variant (26), as well as variants 1, 4, 15-25, and 27-28, encodes isoform c.
    Source sequence(s)
    AC115088, AC127035
    Consensus CDS
    CCDS44582.1
    UniProtKB/Swiss-Prot
    O75143
  26. NM_001346331.1NP_001333260.1  autophagy-related protein 13 isoform c

    Status: REVIEWED

    Description
    Transcript Variant: This variant (27), as well as variants 1, 4, 15-26, and 28, encodes isoform c.
    Source sequence(s)
    AC115088, AC127035
    Consensus CDS
    CCDS44582.1
    UniProtKB/Swiss-Prot
    O75143
  27. NM_001346332.1NP_001333261.1  autophagy-related protein 13 isoform c

    Status: REVIEWED

    Description
    Transcript Variant: This variant (28), as well as variants 1, 4, and 15-27, encodes isoform c.
    Source sequence(s)
    AC115088, AC127035
    Consensus CDS
    CCDS44582.1
    UniProtKB/Swiss-Prot
    O75143
  28. NM_001346333.1NP_001333262.1  autophagy-related protein 13 isoform d

    Status: REVIEWED

    Description
    Transcript Variant: This variant (29), as well as variants 30-33, encodes isoform d.
    Source sequence(s)
    AC115088, AC127035
  29. NM_001346334.1NP_001333263.1  autophagy-related protein 13 isoform d

    Status: REVIEWED

    Description
    Transcript Variant: This variant (30), as well as variants 29 and 31-33, encodes isoform d.
    Source sequence(s)
    AC115088, AC127035
  30. NM_001346335.1NP_001333264.1  autophagy-related protein 13 isoform d

    Status: REVIEWED

    Description
    Transcript Variant: This variant (31), as well as variants 29-30 and 32-33, encodes isoform d.
    Source sequence(s)
    AC115088, AC127035
  31. NM_001346336.1NP_001333265.1  autophagy-related protein 13 isoform d

    Status: REVIEWED

    Description
    Transcript Variant: This variant (32), as well as variants 29-31 and 33, encodes isoform d.
    Source sequence(s)
    AC115088, AC127035
  32. NM_001346337.1NP_001333266.1  autophagy-related protein 13 isoform d

    Status: REVIEWED

    Description
    Transcript Variant: This variant (33), as well as variants 29-32, encodes isoform d.
    Source sequence(s)
    AC115088, AC127035
  33. NM_001346338.1NP_001333267.1  autophagy-related protein 13 isoform e

    Status: REVIEWED

    Description
    Transcript Variant: This variant (34), as well as variant 35, encodes isoform e.
    Source sequence(s)
    AC115088, AC127035
  34. NM_001346340.1NP_001333269.1  autophagy-related protein 13 isoform e

    Status: REVIEWED

    Description
    Transcript Variant: This variant (35), as well as variant 34, encodes isoform e.
    Source sequence(s)
    AC115088, AC127035
  35. NM_001346342.1NP_001333271.1  autophagy-related protein 13 isoform f

    Status: REVIEWED

    Description
    Transcript Variant: This variant (36), as well as variants 2, 5, and 37-45, encodes isoform f.
    Source sequence(s)
    AC115088, AC127035
    Consensus CDS
    CCDS7921.1
    UniProtKB/Swiss-Prot
    O75143
  36. NM_001346344.1NP_001333273.1  autophagy-related protein 13 isoform f

    Status: REVIEWED

    Description
    Transcript Variant: This variant (37), as well as variants 2, 5, 36, and 38-45, encodes isoform f.
    Source sequence(s)
    AC115088, AC127035
    Consensus CDS
    CCDS7921.1
    UniProtKB/Swiss-Prot
    O75143
  37. NM_001346346.1NP_001333275.1  autophagy-related protein 13 isoform f

    Status: REVIEWED

    Description
    Transcript Variant: This variant (38), as well as variants 2, 5, 36-37, and 39-45, encodes isoform f.
    Source sequence(s)
    AC115088, AC127035
    Consensus CDS
    CCDS7921.1
    UniProtKB/Swiss-Prot
    O75143
  38. NM_001346348.1NP_001333277.1  autophagy-related protein 13 isoform f

    Status: REVIEWED

    Description
    Transcript Variant: This variant (39), as well as variants 2, 5, 36-38, and 40-45, encodes isoform f.
    Source sequence(s)
    AC115088, AC127035
    Consensus CDS
    CCDS7921.1
    UniProtKB/Swiss-Prot
    O75143
  39. NM_001346349.1NP_001333278.1  autophagy-related protein 13 isoform f

    Status: REVIEWED

    Description
    Transcript Variant: This variant (40), as well as variants 2, 5, 36-39, and 41-45, encodes isoform f.
    Source sequence(s)
    AC115088, AC127035
    Consensus CDS
    CCDS7921.1
    UniProtKB/Swiss-Prot
    O75143
  40. NM_001346350.1NP_001333279.1  autophagy-related protein 13 isoform f

    Status: REVIEWED

    Description
    Transcript Variant: This variant (41), as well as variants 2, 5, 36-40, and 42-45, encodes isoform f.
    Source sequence(s)
    AC115088, AC127035
    Consensus CDS
    CCDS7921.1
    UniProtKB/Swiss-Prot
    O75143
  41. NM_001346351.1NP_001333280.1  autophagy-related protein 13 isoform f

    Status: REVIEWED

    Description
    Transcript Variant: This variant (42), as well as variants 2, 5, 36-41, and 43-45, encodes isoform f.
    Source sequence(s)
    AC115088, AC127035
    Consensus CDS
    CCDS7921.1
    UniProtKB/Swiss-Prot
    O75143
  42. NM_001346352.1NP_001333281.1  autophagy-related protein 13 isoform f

    Status: REVIEWED

    Description
    Transcript Variant: This variant (43), as well as variants 2, 5, 36-42, and 44-45, encodes isoform f.
    Source sequence(s)
    AC115088, AC127035
    Consensus CDS
    CCDS7921.1
    UniProtKB/Swiss-Prot
    O75143
  43. NM_001346353.1NP_001333282.1  autophagy-related protein 13 isoform f

    Status: REVIEWED

    Description
    Transcript Variant: This variant (44), as well as variants 2, 5, 36-43, and 45, encodes isoform f.
    Source sequence(s)
    AC115088, AC127035
    Consensus CDS
    CCDS7921.1
    UniProtKB/Swiss-Prot
    O75143
  44. NM_001346354.1NP_001333283.1  autophagy-related protein 13 isoform f

    Status: REVIEWED

    Description
    Transcript Variant: This variant (45), as well as variants 2, 5, and 36-44, encodes isoform f.
    Source sequence(s)
    AC115088, AC127035
    Consensus CDS
    CCDS7921.1
    UniProtKB/Swiss-Prot
    O75143
  45. NM_001346355.1NP_001333284.1  autophagy-related protein 13 isoform g

    Status: REVIEWED

    Description
    Transcript Variant: This variant (46), as well as variant 47, encodes isoform g.
    Source sequence(s)
    AC115088, AC127035
  46. NM_001346356.1NP_001333285.1  autophagy-related protein 13 isoform g

    Status: REVIEWED

    Description
    Transcript Variant: This variant (47), as well as variant 46, encodes isoform g.
    Source sequence(s)
    AC115088, AC127035
  47. NM_001346357.1NP_001333286.1  autophagy-related protein 13 isoform i

    Status: REVIEWED

    Description
    Transcript Variant: This variant (48), as well as variants 49 and 50, encodes isoform i.
    Source sequence(s)
    AC115088, AC127035
  48. NM_001346358.1NP_001333287.1  autophagy-related protein 13 isoform i

    Status: REVIEWED

    Description
    Transcript Variant: This variant (49), as well as variants 48 and 50, encodes isoform i.
    Source sequence(s)
    AC115088, AC127035
  49. NM_001346359.1NP_001333288.1  autophagy-related protein 13 isoform i

    Status: REVIEWED

    Description
    Transcript Variant: This variant (50), as well as variants 48 and 49, encodes isoform i.
    Source sequence(s)
    AC115088, AC127035
  50. NM_001346360.1NP_001333289.1  autophagy-related protein 13 isoform j

    Status: REVIEWED

    Description
    Transcript Variant: This variant (51) encodes isoform j.
    Source sequence(s)
    AC115088, AC127035
  51. NM_014741.4NP_055556.2  autophagy-related protein 13 isoform f

    See identical proteins and their annotated locations for NP_055556.2

    Status: REVIEWED

    Description
    Transcript Variant: This variant (2) includes an alternate exon in the 5' UTR and lacks two exons in the coding region compared to variant 3. The resulting isoform (f, also known as isoform 2) is shorter but has the same N- and C- termini compared to isoform a. Variants 2, 5, and 36-45 all encode the same isoform (f).
    Source sequence(s)
    AC115088, BC002378, DA195671
    Consensus CDS
    CCDS7921.1
    UniProtKB/Swiss-Prot
    O75143
    Related
    ENSP00000433543.1, ENST00000524625.5
    Conserved Domains (1) summary
    pfam10033
    Location:19195
    ATG13; Autophagy-related protein 13

RNA

  1. NR_144422.1 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AC115088, AC127035
  2. NR_144423.1 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AC115088, AC127035
  3. NR_144424.1 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AC115088, AC127035

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p12 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p12 Primary Assembly

    Range
    46617276..46676019
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011520493.2XP_011518795.1  autophagy-related protein 13 isoform X1

    See identical proteins and their annotated locations for XP_011518795.1

    UniProtKB/Swiss-Prot
    O75143
    Conserved Domains (1) summary
    pfam10033
    Location:19195
    ATG13; Autophagy-related protein 13
  2. XM_005253266.3XP_005253323.1  autophagy-related protein 13 isoform X1

    See identical proteins and their annotated locations for XP_005253323.1

    UniProtKB/Swiss-Prot
    O75143
    Conserved Domains (1) summary
    pfam10033
    Location:19195
    ATG13; Autophagy-related protein 13
  3. XM_005253265.3XP_005253322.1  autophagy-related protein 13 isoform X1

    See identical proteins and their annotated locations for XP_005253322.1

    UniProtKB/Swiss-Prot
    O75143
    Conserved Domains (1) summary
    pfam10033
    Location:19195
    ATG13; Autophagy-related protein 13
  4. XM_011520500.2XP_011518802.1  autophagy-related protein 13 isoform X2

    Conserved Domains (1) summary
    pfam10033
    Location:19195
    ATG13; Autophagy-related protein 13
  5. XM_011520502.2XP_011518804.1  autophagy-related protein 13 isoform X4

    Conserved Domains (1) summary
    pfam10033
    Location:19195
    ATG13; Autophagy-related protein 13
  6. XM_017018599.2XP_016874088.1  autophagy-related protein 13 isoform X1

    UniProtKB/Swiss-Prot
    O75143
    Conserved Domains (1) summary
    pfam10033
    Location:19195
    ATG13; Autophagy-related protein 13
  7. XM_017018603.2XP_016874092.1  autophagy-related protein 13 isoform X3

    UniProtKB/Swiss-Prot
    O75143
    Conserved Domains (1) summary
    pfam10033
    Location:19195
    ATG13; Autophagy-related protein 13
  8. XM_017018618.2XP_016874107.1  autophagy-related protein 13 isoform X5

  9. XM_006718396.3XP_006718459.1  autophagy-related protein 13 isoform X1

    See identical proteins and their annotated locations for XP_006718459.1

    UniProtKB/Swiss-Prot
    O75143
    Conserved Domains (1) summary
    pfam10033
    Location:19195
    ATG13; Autophagy-related protein 13
  10. XM_005253268.2XP_005253325.1  autophagy-related protein 13 isoform X1

    See identical proteins and their annotated locations for XP_005253325.1

    UniProtKB/Swiss-Prot
    O75143
    Conserved Domains (1) summary
    pfam10033
    Location:19195
    ATG13; Autophagy-related protein 13
  11. XM_017018607.1XP_016874096.1  autophagy-related protein 13 isoform X3

    UniProtKB/Swiss-Prot
    O75143
    Conserved Domains (1) summary
    pfam10033
    Location:19195
    ATG13; Autophagy-related protein 13
  12. XM_011520499.3XP_011518801.1  autophagy-related protein 13 isoform X1

    See identical proteins and their annotated locations for XP_011518801.1

    UniProtKB/Swiss-Prot
    O75143
    Conserved Domains (1) summary
    pfam10033
    Location:19195
    ATG13; Autophagy-related protein 13
  13. XM_011520496.3XP_011518798.1  autophagy-related protein 13 isoform X1

    See identical proteins and their annotated locations for XP_011518798.1

    UniProtKB/Swiss-Prot
    O75143
    Conserved Domains (1) summary
    pfam10033
    Location:19195
    ATG13; Autophagy-related protein 13
  14. XM_024448781.1XP_024304549.1  autophagy-related protein 13 isoform X6

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