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TBKBP1 TBK1 binding protein 1 [ Homo sapiens (human) ]

Gene ID: 9755, updated on 27-Nov-2024

Summary

Official Symbol
TBKBP1provided by HGNC
Official Full Name
TBK1 binding protein 1provided by HGNC
Primary source
HGNC:HGNC:30140
See related
Ensembl:ENSG00000198933 MIM:608476; AllianceGenome:HGNC:30140
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
SINTBAD; ProSAPiP2
Summary
TBKBP1 is an adaptor protein that binds to TBK1 (MIM 604834) and is part of the interaction network in the TNF (MIM 191160)/NFKB (see MIM 164011) pathway (Bouwmeester et al., 2004 [PubMed 14743216]).[supplied by OMIM, Mar 2008]
Expression
Ubiquitous expression in brain (RPKM 4.8), fat (RPKM 4.5) and 25 other tissues See more
Orthologs
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Genomic context

See TBKBP1 in Genome Data Viewer
Location:
17q21.32
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (47694063..47712063)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (48555851..48573871)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (45771429..45789429)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene aminopeptidase puromycin sensitive Neighboring gene KPNB1 divergent transcript Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:45725440-45726285 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8630 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8631 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8632 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8633 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8634 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8635 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12313 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12314 Neighboring gene karyopherin subunit beta 1 Neighboring gene H3K27ac hESC enhancer GRCh37_chr17:45771282-45771962 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:45771963-45772642 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:45772643-45773323 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12315 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8638 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:45791473-45791974 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:45791975-45792474 Neighboring gene TBX21 promoter region Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8640 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12316 Neighboring gene T-box transcription factor 21 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:45855331-45855844 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:45866576-45867378 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:45867379-45868179 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:45885766-45886266 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:45886267-45886767 Neighboring gene ReSE screen-validated silencer GRCh37_chr17:45899123-45899338 Neighboring gene oxysterol binding protein like 7

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Phenotypes

EBI GWAS Catalog

Description
Genetic Loci Associated with Circulating Levels of Very Long-Chain Saturated Fatty Acids.
EBI GWAS Catalog
Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.
EBI GWAS Catalog
Interaction between ERAP1 and HLA-B27 in ankylosing spondylitis implicates peptide handling in the mechanism for HLA-B27 in disease susceptibility.
EBI GWAS Catalog

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Clone Names

  • KIAA0775

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
involved_in defense response to virus NAS
Non-traceable Author Statement
more info
PubMed 
involved_in type I interferon-mediated signaling pathway NAS
Non-traceable Author Statement
more info
PubMed 
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
 
part_of serine/threonine protein kinase complex NAS
Non-traceable Author Statement
more info
PubMed 

General protein information

Preferred Names
TANK-binding kinase 1-binding protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001394755.1NP_001381684.1  TANK-binding kinase 1-binding protein 1

    Status: VALIDATED

    Source sequence(s)
    AC015674
    Consensus CDS
    CCDS45722.1
    UniProtKB/Swiss-Prot
    A7MCY6, B2RZG6, O94873, Q14DW3
    Related
    ENSP00000462339.2, ENST00000578982.6
    Conserved Domains (2) summary
    TIGR02168
    Location:47332
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    pfam12845
    Location:288341
    TBD; TBD domain
  2. NM_001394756.1NP_001381685.1  TANK-binding kinase 1-binding protein 1

    Status: VALIDATED

    Source sequence(s)
    AC015674
    Consensus CDS
    CCDS45722.1
    UniProtKB/Swiss-Prot
    A7MCY6, B2RZG6, O94873, Q14DW3
    Conserved Domains (2) summary
    TIGR02168
    Location:47332
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    pfam12845
    Location:288341
    TBD; TBD domain
  3. NM_014726.2NP_055541.1  TANK-binding kinase 1-binding protein 1

    See identical proteins and their annotated locations for NP_055541.1

    Status: VALIDATED

    Source sequence(s)
    BC167150, CB241552, DT217050
    Consensus CDS
    CCDS45722.1
    UniProtKB/Swiss-Prot
    A7MCY6, B2RZG6, O94873, Q14DW3
    Related
    ENSP00000354777.3, ENST00000361722.7
    Conserved Domains (2) summary
    TIGR02168
    Location:47332
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    pfam12845
    Location:288341
    TBD; TBD domain

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

    Range
    47694063..47712063
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047437156.1XP_047293112.1  TANK-binding kinase 1-binding protein 1 isoform X2

  2. XM_005257861.5XP_005257918.1  TANK-binding kinase 1-binding protein 1 isoform X1

    See identical proteins and their annotated locations for XP_005257918.1

    UniProtKB/Swiss-Prot
    A7MCY6, B2RZG6, O94873, Q14DW3
    Conserved Domains (2) summary
    TIGR02168
    Location:47332
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    pfam12845
    Location:288341
    TBD; TBD domain
  3. XM_047437154.1XP_047293110.1  TANK-binding kinase 1-binding protein 1 isoform X2

  4. XM_047437153.1XP_047293109.1  TANK-binding kinase 1-binding protein 1 isoform X2

  5. XM_017025432.2XP_016880921.1  TANK-binding kinase 1-binding protein 1 isoform X3

    Conserved Domains (2) summary
    pfam12845
    Location:289339
    TBD; TBD domain
    cl02600
    Location:87135
    HTH_MerR-SF; Helix-Turn-Helix DNA binding domain of transcription regulators from the MerR superfamily
  6. XM_047437155.1XP_047293111.1  TANK-binding kinase 1-binding protein 1 isoform X2

  7. XM_005257860.5XP_005257917.1  TANK-binding kinase 1-binding protein 1 isoform X1

    See identical proteins and their annotated locations for XP_005257917.1

    UniProtKB/Swiss-Prot
    A7MCY6, B2RZG6, O94873, Q14DW3
    Conserved Domains (2) summary
    TIGR02168
    Location:47332
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    pfam12845
    Location:288341
    TBD; TBD domain
  8. XM_047437157.1XP_047293113.1  TANK-binding kinase 1-binding protein 1 isoform X4

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060941.1 Alternate T2T-CHM13v2.0

    Range
    48555851..48573871
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054317977.1XP_054173952.1  TANK-binding kinase 1-binding protein 1 isoform X2

  2. XM_054317976.1XP_054173951.1  TANK-binding kinase 1-binding protein 1 isoform X2

  3. XM_054317979.1XP_054173954.1  TANK-binding kinase 1-binding protein 1 isoform X3

  4. XM_054317974.1XP_054173949.1  TANK-binding kinase 1-binding protein 1 isoform X2

  5. XM_054317972.1XP_054173947.1  TANK-binding kinase 1-binding protein 1 isoform X1

    UniProtKB/Swiss-Prot
    A7MCY6, B2RZG6, O94873, Q14DW3
  6. XM_054317975.1XP_054173950.1  TANK-binding kinase 1-binding protein 1 isoform X2

  7. XM_054317973.1XP_054173948.1  TANK-binding kinase 1-binding protein 1 isoform X1

    UniProtKB/Swiss-Prot
    A7MCY6, B2RZG6, O94873, Q14DW3
  8. XM_054317978.1XP_054173953.1  TANK-binding kinase 1-binding protein 1 isoform X3

  9. XM_054317980.1XP_054173955.1  TANK-binding kinase 1-binding protein 1 isoform X4