U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SCHCODRAFT_02611380 uncharacterized protein [ Schizophyllum commune H4-8 ]

Gene ID: 9592338, updated on 23-Nov-2023

Summary

Go to the top of the page Help
Gene symbol
SCHCODRAFT_02611380
Gene description
uncharacterized protein
Locus tag
SCHCODRAFT_02611380
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizophyllum commune H4-8 (strain: H4-8)
Lineage
Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Agaricomycetes; Agaricomycetidae; Agaricales; Schizophyllaceae; Schizophyllum
Old locus tag
SCHCODRAFT_104014
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: Unknown
Exon count:
10

NW_026089539.1Genomic Context describing neighboring genes Neighboring gene D-aminoacid aminotransferase-like PLP-dependent enzyme Neighboring gene tRNA-Trp Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene NAD(P)-binding protein

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_026089539.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. The Transcription Factor Roc1 Is a Key Regulator of Cellulose Degradation in the Wood-Decaying Mushroom Schizophyllum commune. Marian IM, et al. mBio, 2022 Jun 28. PMID 35604096, Free PMC Article
  2. Genome sequence of the model mushroom Schizophyllum commune. Ohm RA, et al. Nat Biotechnol, 2010 Sep. PMID 20622885

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
uncharacterized protein

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_026089539.1 Reference assembly

    Range
    2129461..2133023
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003038614.3 → XP_003038660.1  uncharacterized protein SCHCODRAFT_02611380 [Schizophyllum commune H4-8]

    See identical proteins and their annotated locations for XP_003038660.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    D8PQC9
    Conserved Domains (5) summary
    cd02249
    Location:320 → 366
    ZZ; Zinc finger, ZZ type. Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have ...
    cd02340
    Location:526 → 573
    ZZ_NBR1_like; Zinc finger, ZZ type. Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears ...
    pfam14616
    Location:285 → 330
    DUF4451; Domain of unknown function (DUF4451)
    pfam16158
    Location:788 → 887
    N_BRCA1_IG; Ig-like domain from next to BRCA1 gene
    cl02720
    Location:2 → 40
    PB1; The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 ...
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases