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SCHCODRAFT_02749442 glycoside hydrolase family 13 protein [ Schizophyllum commune H4-8 ]

Gene ID: 9586700, updated on 17-May-2024

Summary

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Gene symbol
SCHCODRAFT_02749442
Gene description
glycoside hydrolase family 13 protein
Locus tag
SCHCODRAFT_02749442
See related
FungiDB:SCHCODRAFT_02749442; VEuPathDB:SCHCODRAFT_02749442
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizophyllum commune H4-8 (strain: H4-8)
Lineage
Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Agaricomycetes; Agaricomycetidae; Agaricales; Schizophyllaceae; Schizophyllum
Old locus tag
SCHCODRAFT_235431
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Genomic context

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See SCHCODRAFT_02749442 in Genome Data Viewer
Location:
chromosome: Unknown
Exon count:
6

NW_026089544.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene SNF5-domain-containing protein Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_026089544.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Transcription Factor Roc1 Is a Key Regulator of Cellulose Degradation in the Wood-Decaying Mushroom Schizophyllum commune. Marian IM, et al. mBio, 2022 Jun 28. PMID 35604096, Free PMC Article
  2. Genome sequence of the model mushroom Schizophyllum commune. Ohm RA, et al. Nat Biotechnol, 2010 Sep. PMID 20622885

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-amylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glycoside hydrolase family 13 protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_026089544.1 Reference assembly

    Range
    1281150..1283385 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003030907.2 → XP_003030953.1  glycoside hydrolase family 13 protein [Schizophyllum commune H4-8]

    See identical proteins and their annotated locations for XP_003030953.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    D8Q7N0
    Conserved Domains (3) summary
    cd11319
    Location:19 → 393
    AmyAc_euk_AmyA; Alpha amylase catalytic domain found in eukaryotic Alpha-amylases (also called 1,4-alpha-D-glucan-4-glucanohydrolase)
    pfam00128
    Location:58 → 358
    Alpha-amylase; Alpha amylase, catalytic domain
    pfam09260
    Location:410 → 488
    DUF1966; Domain of unknown function (DUF1966)
Nucleotide Protein
Heading Accession and Version

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