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VDBG_06667 DNA ligase [ Verticillium alfalfae VaMs.102 ]

Gene ID: 9537149, updated on 21-Dec-2023

Summary

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Gene symbol
VDBG_06667
Gene description
DNA ligase
Locus tag
VDBG_06667
Gene type
protein coding
RNA name
DNA ligase
RefSeq status
PROVISIONAL
Organism
Verticillium alfalfae VaMs.102 (strain: VaMs.102)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Hypocreomycetidae; Glomerellales; Plectosphaerellaceae; Verticillium
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Genomic context

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See VDBG_06667 in Genome Data Viewer
Location:
chromosome: Unknown
Exon count:
3

NW_003315031.1Genomic Context describing neighboring genes Neighboring gene conserved hypothetical protein Neighboring gene uracil phosphoribosyltransferase Neighboring gene conserved hypothetical protein Neighboring gene predicted protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003315031.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA ligase (ATP) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA ligation involved in DNA repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in DNA recombination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in double-strand break repair via nonhomologous end joining IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nucleotide-excision repair, DNA gap filling IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of DNA ligase IV complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
DNA ligase

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_003315031.1 Reference assembly

    Range
    778166..781192 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003003059.1 → XP_003003105.1  DNA ligase [Verticillium alfalfae VaMs.102]

    See identical proteins and their annotated locations for XP_003003105.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    C9SP42
    Conserved Domains (5) summary
    cd07968
    Location:484 → 628
    OBF_DNA_ligase_IV; The Oligonucleotide/oligosaccharide binding (OB)-fold domain of ATP-dependent DNA ligase IV is a DNA-binding module that is part of the catalytic core unit
    cd07903
    Location:286 → 480
    Adenylation_DNA_ligase_IV; Adenylation domain of DNA Ligase IV
    TIGR00574
    Location:127 → 634
    dnl1; DNA ligase I, ATP-dependent (dnl1)
    pfam00533
    Location:679 → 759
    BRCT; BRCA1 C Terminus (BRCT) domain
    pfam04675
    Location:86 → 249
    DNA_ligase_A_N; DNA ligase N terminus
Nucleotide Protein
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