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VDBG_03075 DNA ligase [ Verticillium alfalfae VaMs.102 ]

Gene ID: 9533086, updated on 21-Dec-2023

Summary

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Gene symbol
VDBG_03075
Gene description
DNA ligase
Locus tag
VDBG_03075
Gene type
protein coding
RNA name
DNA ligase
RefSeq status
PROVISIONAL
Organism
Verticillium alfalfae VaMs.102 (strain: VaMs.102)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Hypocreomycetidae; Glomerellales; Plectosphaerellaceae; Verticillium
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Genomic context

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Location:
chromosome: Unknown
Exon count:
3

NW_003315036.1Genomic Context describing neighboring genes Neighboring gene BolA domain-containing protein Neighboring gene AP-1 complex subunit beta-1 Neighboring gene conserved hypothetical protein Neighboring gene conserved hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003315036.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA ligase (ATP) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in DNA recombination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in base-excision repair, DNA ligation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in double-strand break repair via alternative nonhomologous end joining IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lagging strand elongation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mitochondrial DNA repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of DNA ligase III-XRCC1 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
DNA ligase

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_003315036.1 Reference assembly

    Range
    1861688..1864359 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003006890.1 → XP_003006936.1  DNA ligase [Verticillium alfalfae VaMs.102]

    See identical proteins and their annotated locations for XP_003006936.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    C9SD01
    Conserved Domains (3) summary
    cd07900
    Location:360 → 627
    Adenylation_DNA_ligase_I_Euk; Adenylation domain of eukaryotic DNA Ligase I
    pfam04675
    Location:170 → 286
    DNA_ligase_A_N; DNA ligase N terminus
    cl08424
    Location:632 → 685
    OBF_DNA_ligase_family; The Oligonucleotide/oligosaccharide binding (OB)-fold domain is a DNA-binding module that is part of the catalytic core unit of ATP dependent DNA ligases
Nucleotide Protein
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Gene LinkOut

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