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yjcS [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 948597, updated on 11-Sep-2024

Summary

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Official Symbol
yjcS
Primary source
ECOCYC:EG11955
Locus tag
b4083
See related
ASAP:ABE-0013377
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK4076
Summary
Flagellar regulon. [More information is available at EcoGene: EG11955]. The promoter of yjcS is predicted to be 28-dependent and can be transcribed by |FRAME: [More information is available at EcoCyc: EG11955].
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Genomic context

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Sequence:
NC_000913.3 (4304612..4306597, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative multidrug efflux pump subunit MdtO Neighboring gene putative multidrug efflux pump membrane fusion protein Neighboring gene putative lipoprotein YtcA Neighboring gene D-allose kinase Neighboring gene D-allulose-6-phosphate 3-epimerase Neighboring gene D-allose ABC transporter membrane subunit Neighboring gene D-allose ABC transporter ATP binding subunit

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Structural and functional analysis show that the Escherichia coli uncharacterized protein YjcS is likely an alkylsulfatase. Liang Y, et al. Protein Sci, 2014 Oct. PMID 25066955, Free PMC Article
  2. In silico prediction and functional validation of sigma28-regulated genes in Chlamydia and Escherichia coli. Yu HH, et al. J Bacteriol, 2006 Dec. PMID 16997971, Free PMC Article
  3. Analysis of the Escherichia coli genome. IV. DNA sequence of the region from 89.2 to 92.8 minutes. Blattner FR, et al. Nucleic Acids Res, 1993 Nov 25. PMID 8265357, Free PMC Article
  4. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
  5. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
  
enables linear primary-alkylsulfatase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables linear primary-alkylsulfatase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables linear primary-alkylsulfatase activity IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in dodecyl sulfate metabolic process IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in dodecyl sulfate metabolic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within dodecyl sulfate metabolic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
is_active_in outer membrane-bounded periplasmic space IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in outer membrane-bounded periplasmic space IDA
Inferred from Direct Assay
more info
 PubMed 
located_in periplasmic space IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
linear primary-alkylsulfatase

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    4304612..4306597 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_418507.2 linear primary-alkylsulfatase [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_418507.2

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A8S7IN30
    Conserved Domains (1) summary
    COG2015
    Location:8 → 661
    BDS1; Alkyl sulfatase BDS1 and related hydrolases, metallo-beta-lactamase superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Nucleotide Protein
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