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bcsZ endo-1,4-D-glucanase [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 948046, updated on 10-Oct-2024

Summary

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Official Symbol
bcsZ
Official Full Name
endo-1,4-D-glucanase
Primary source
ECOCYC:EG12258
Locus tag
b3531
See related
ASAP:ABE-0011541
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
bcsC; ECK3516; yhjM
Summary
First 21 aa are predicted to be a type I signal peptide. [More information is available at EcoGene: EG12258]. The bcsZ gene encodes an endo-1,4-D-glucanase which belongs to glycosyl hydrolase family 8 . [More information is available at EcoCyc: EG12258].
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Genomic context

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Sequence:
NC_000913.3 (3689155..3690261, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene C4 dicarboxylate/orotate:H(+) symporter Neighboring gene c-di-GMP phosphodiesterase PdeK Neighboring gene cellulose synthase outer membrane channel Neighboring gene cellulose synthase periplasmic subunit Neighboring gene cellulose synthase catalytic subunit Neighboring gene pseudo

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Cloning of the Escherichia coli endo-1,4-D-glucanase gene and identification of its product. Park YW, et al. Mol Gen Genet, 1999 Mar. PMID 10102357
  2. Tight modulation of Escherichia coli bacterial biofilm formation through controlled expression of adhesion factors. Da Re S, et al. Appl Environ Microbiol, 2007 May. PMID 17384304, Free PMC Article
  3. Global gene expression profiling in Escherichia coli K12. The effects of oxygen availability and FNR. Salmon K, et al. J Biol Chem, 2003 Aug 8. PMID 12754220
  4. Prediction of lipoprotein signal peptides in Gram-negative bacteria. Juncker AS, et al. Protein Sci, 2003 Aug. PMID 12876315, Free PMC Article
  5. Fine-tuning the prediction of sequences cleaved by signal peptidase II: a curated set of proven and predicted lipoproteins of Escherichia coli K-12. Gonnet P, et al. Proteomics, 2004 Jun. PMID 15174130

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables cellulase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables cellulase activity IEA
Inferred from Electronic Annotation
more info
  
enables hydrolase activity, acting on glycosyl bonds IEA
Inferred from Electronic Annotation
more info
  
enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
  
involved_in cellulose catabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in extracellular region IDA
Inferred from Direct Assay
more info
 PubMed 
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
endo-1,4-D-glucanase
NP_417988.1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    3689155..3690261 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_417988.1 endo-1,4-D-glucanase [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_417988.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A376M0V4, A0AAN6ATK4, C4PG04
    Conserved Domains (1) summary
    PRK11097
    Location:1 → 368
    PRK11097; cellulase
Nucleotide Protein
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