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cyaY frataxin CyaY [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 947754, updated on 4-Apr-2024

Summary

Gene symbol
cyaY
Gene description
frataxin CyaY
Primary source
ASAP:ABE-0012435
Locus tag
b3807
See related
ECOCYC:EG11653
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK3801
Summary
Frataxin-related. [More information is available at EcoGene: EG11653]. CyaY is a protein with similarity to human frataxin, mutations in which are responsible for Friedreich's ataxia. [More information is available at EcoCyc: EG11653].
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Genomic context

Sequence:
NC_000913.3 (3993739..3994059, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene uroporphyrinogen-III synthase Neighboring gene hydroxymethylbilane synthase Neighboring gene adenylate cyclase Neighboring gene protein YzcX Neighboring gene putative lipoprotein YifL Neighboring gene diaminopimelate epimerase Neighboring gene DUF484 domain-containing protein YigA

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables ferric iron binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables ferric iron binding IDA
Inferred from Direct Assay
more info
PubMed 
enables ferric iron binding IEA
Inferred from Electronic Annotation
more info
 
enables ferrous iron binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables ferrous iron binding IDA
Inferred from Direct Assay
more info
PubMed 
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within iron-sulfur cluster assembly IDA
Inferred from Direct Assay
more info
PubMed 
involved_in iron-sulfur cluster assembly IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within iron-sulfur cluster assembly IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
located_in cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 
is_active_in cytosol IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in cytosol IDA
Inferred from Direct Assay
more info
PubMed 

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    3993739..3994059 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_418251.1 frataxin CyaY [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_418251.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A2W6PFW5, A0A5B9AR44
    Conserved Domains (1) summary
    PRK00446
    Location:1106
    cyaY; frataxin-like protein; Provisional