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speB agmatinase [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 947715, updated on 19-Sep-2024

Summary

Official Symbol
speB
Official Full Name
agmatinase
Primary source
ECOCYC:EG10960
Locus tag
b2937
See related
ASAP:ABE-0009632
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK2932
Summary
HT_Cmplx35_Cyt: [More information is available at EcoGene: EG10960]. Agmatinase (SpeB) carries out the second step in putrescine biosynthesis, generating the pathway's putrescine product. [More information is available at EcoCyc: EG10960].
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Genomic context

Sequence:
NC_000913.3 (3082877..3083797, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene transketolase 1 Neighboring gene metalloprotease LoiP Neighboring gene biosynthetic arginine decarboxylase Neighboring gene acid stress response protein YqgB

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables agmatinase activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables agmatinase activity IDA
Inferred from Direct Assay
more info
PubMed 
enables agmatinase activity IEA
Inferred from Electronic Annotation
more info
 
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
 
enables hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines IEA
Inferred from Electronic Annotation
more info
 
enables identical protein binding IDA
Inferred from Direct Assay
more info
PubMed 
enables manganese ion binding IDA
Inferred from Direct Assay
more info
PubMed 
enables manganese ion binding IEA
Inferred from Electronic Annotation
more info
 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in cytosol IDA
Inferred from Direct Assay
more info
PubMed 

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    3082877..3083797 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_417412.1 agmatinase [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_417412.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A376UHZ9
    Conserved Domains (1) summary
    PRK02190
    Location:7306
    PRK02190; agmatinase; Provisional