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ybhF ABC exporter ATP binding subunit YbhF [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 945413, updated on 19-Sep-2024

Summary

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Official Symbol
ybhF
Official Full Name
ABC exporter ATP binding subunit YbhF
Primary source
ECOCYC:G6411
Locus tag
b0794
See related
ASAP:ABE-0002707
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK0783
Summary
The putative ybiHybhGFSR operon encodes the YbhG putative membrane fusion protein of efflux pumps. [More information is available at EcoGene: EG13314]. YbhF is an ATP-binding component of a predicted ATP-dependent efflux pump. [More information is available at EcoCyc: G6411].
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Genomic context

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Sequence:
NC_000913.3 (827245..828981, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene cardiolipin synthase B Neighboring gene endonuclease/exonuclease/phosphatase domain-containing protein YbhP Neighboring gene inner membrane protein YbhQ Neighboring gene ABC exporter membrane subunit YbhR Neighboring gene ABC exporter membrane subunit YbhS Neighboring gene HlyD_D23 family protein YbhG Neighboring gene DNA-binding transcriptional dual regulator CecR Neighboring gene ATP-dependent RNA helicase RhlE

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A Putative Efflux Transporter of the ABC Family, YbhFSR, in Escherichia coli Functions in Tetracycline Efflux and Na(+)(Li(+))/H(+) Transport. Feng Z, et al. Front Microbiol, 2020. PMID 32390957, Free PMC Article
  2. Transcription factor CecR (YbiH) regulates a set of genes affecting the sensitivity of Escherichia coli against cefoperazone and chloramphenicol. Yamanaka Y, et al. Microbiology (Reading), 2016 Jul. PMID 27112147
  3. The Escherichia coli ATP-binding cassette (ABC) proteins. Linton KJ, et al. Mol Microbiol, 1998 Apr. PMID 9593292
  4. Comparison of SDS- and methanol-assisted protein solubilization and digestion methods for Escherichia coli membrane proteome analysis by 2-D LC-MS/MS. Zhang N, et al. Proteomics, 2007 Feb. PMID 17309111
  5. Getting in or out: early segregation between importers and exporters in the evolution of ATP-binding cassette (ABC) transporters. Saurin W, et al. J Mol Evol, 1999 Jan. PMID 9873074

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
  
enables efflux transmembrane transporter activity IMP
Inferred from Mutant Phenotype
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in lithium ion transmembrane transport NAS
Non-traceable Author Statement
more info
 PubMed 
involved_in sodium ion transmembrane transport NAS
Non-traceable Author Statement
more info
 PubMed 
involved_in tetracycline transmembrane transport NAS
Non-traceable Author Statement
more info
 PubMed 
acts_upstream_of_or_within xenobiotic detoxification by transmembrane export across the plasma membrane IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in xenobiotic transmembrane transport NAS
Non-traceable Author Statement
more info
 PubMed 
Component Evidence Code Pubs
part_of ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing NAS
Non-traceable Author Statement
more info
 PubMed 
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
ABC exporter ATP binding subunit YbhF
NP_415315.4

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    827245..828981 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_415315.4 ABC exporter ATP binding subunit YbhF [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_415315.4

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A7D7KEB7, A0A7L7ECG7
    Conserved Domains (1) summary
    NF033858
    Location:5 → 565
    ABC2_perm_RbbA; ribosome-associated ATPase/putative transporter RbbA
Nucleotide Protein
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