U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

ydiP putative DNA-binding transcriptional regulator YdiP [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 945095, updated on 19-Sep-2024

Summary

Go to the top of the page Help
Official Symbol
ydiP
Official Full Name
putative DNA-binding transcriptional regulator YdiP
Primary source
ECOCYC:G6919
Locus tag
b1696
See related
ASAP:ABE-0005660
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK1694
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Sequence:
NC_000913.3 (1778390..1779301, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative acetate-CoA transferase YdiF Neighboring gene putative acyl-CoA dehydrogenase YdiO Neighboring gene putative electron transfer flavoprotein subunit YdiQ Neighboring gene putative electron transfer flavoprotein subunit YdiR

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. The repertoire of DNA-binding transcriptional regulators in Escherichia coli K-12. Pérez-Rueda E, et al. Nucleic Acids Res, 2000 Apr 15. PMID 10734204, Free PMC Article
  2. Phylogenetic distribution of DNA-binding transcription factors in bacteria and archaea. Pérez-Rueda E, et al. Comput Biol Chem, 2004 Dec. PMID 15556475
  3. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
  4. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503
  5. Escherichia coli K-12: a cooperatively developed annotation snapshot--2005. Riley M, et al. Nucleic Acids Res, 2006. PMID 16397293, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
  
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
putative DNA-binding transcriptional regulator YdiP

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    1778390..1779301 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_416211.1 putative DNA-binding transcriptional regulator YdiP [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_416211.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A376YCE2
    Conserved Domains (2) summary
    COG2207
    Location:181 → 284
    AraC; AraC-type DNA-binding domain and AraC-containing proteins [Transcription]
    pfam07883
    Location:30 → 89
    Cupin_2; Cupin domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.