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FAM189A2 family with sequence similarity 189 member A2 [ Homo sapiens (human) ]

Gene ID: 9413, updated on 11-Jun-2021

Summary

Official Symbol
FAM189A2provided by HGNC
Official Full Name
family with sequence similarity 189 member A2provided by HGNC
Primary source
HGNC:HGNC:24820
See related
Ensembl:ENSG00000135063 MIM:607710
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
X123; ENTREP; C9orf61
Expression
Broad expression in thyroid (RPKM 15.5), lung (RPKM 12.0) and 14 other tissues See more
Orthologs
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Genomic context

See FAM189A2 in Genome Data Viewer
Location:
9q21.12
Exon count:
14
Annotation release Status Assembly Chr Location
109.20210514 current GRCh38.p13 (GCF_000001405.39) 9 NC_000009.12 (69324567..69392461)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (71939483..72007372)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene tight junction protein 2 Neighboring gene BRAF-activated non-protein coding RNA Neighboring gene uncharacterized LOC105376074 Neighboring gene 9q21.12 proximal LINE-mediated recombination region Neighboring gene amyloid beta precursor protein binding family A member 1 Neighboring gene 9q21.12 distal LINE-mediated recombination region

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

Associated conditions

Description Tests
A genome-wide association study of seasonal pattern mania identifies NF1A as a possible susceptibility gene for bipolar disorder.
GeneReviews: Not available

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC142243, MGC142245

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
protein FAM189A2
Names
Friedreich ataxia region gene X123

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_052888.1 RefSeqGene

    Range
    5739..72902
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001127608.3NP_001121080.1  protein FAM189A2 precursor isoform b precursor

    See identical proteins and their annotated locations for NP_001121080.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' structure, resulting in the use of a downstream start codon, compared to variant 3. The encoded isoform (b) has a shorter N-terminus compared to isoform a. Variants 1 and 2 encode the same isoform.
    Source sequence(s)
    AI961387, AK126127, AL355140, BC021685, DA824091
    Consensus CDS
    CCDS6629.1
    UniProtKB/Swiss-Prot
    Q15884
    UniProtKB/TrEMBL
    Q8WU02
    Related
    ENSP00000395675.1, ENST00000455972.6
    Conserved Domains (1) summary
    pfam04103
    Location:18107
    CD20; CD20-like family
  2. NM_001347995.2NP_001334924.1  protein FAM189A2 isoform a

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) represents the longest transcript and encodes the longer isoform (a).
    Source sequence(s)
    AL355140
    Consensus CDS
    CCDS87658.1
    Related
    ENSP00000304435.8, ENST00000303068.14
    Conserved Domains (1) summary
    pfam04103
    Location:108261
    CD20; CD20-like family
  3. NM_004816.5NP_004807.3  protein FAM189A2 precursor isoform b precursor

    See identical proteins and their annotated locations for NP_004807.3

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) differs in the 5' structure, resulting in the use of a downstream start codon, compared to variant 3. The encoded isoform (b) has a shorter N-terminus compared to isoform a. Variants 1 and 2 encode the same isoform.
    Source sequence(s)
    AI961387, AK126127, BC021685
    Consensus CDS
    CCDS6629.1
    UniProtKB/Swiss-Prot
    Q15884
    UniProtKB/TrEMBL
    Q8WU02
    Related
    ENSP00000257515.8, ENST00000257515.12
    Conserved Domains (1) summary
    pfam04103
    Location:18107
    CD20; CD20-like family

RNA

  1. NR_170669.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL355140

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20210514

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p13 Primary Assembly

    Range
    69324567..69392461
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017015325.1XP_016870814.1  protein FAM189A2 isoform X3

    Related
    ENST00000460871.1
  2. XM_017015324.1XP_016870813.1  protein FAM189A2 isoform X1

    Related
    ENST00000643727.1
  3. XM_024447718.1XP_024303486.1  protein FAM189A2 isoform X2

    Conserved Domains (1) summary
    pfam04103
    Location:18107
    CD20; CD20-like family
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