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lytF gamma-D-glutamate-meso-diaminopimelate muropeptidase (major autolysin, vegetative) [ Bacillus subtilis subsp. subtilis str. 168 ]

Gene ID: 939271, updated on 6-Oct-2023

Summary

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Gene symbol
lytF
Gene description
gamma-D-glutamate-meso-diaminopimelate muropeptidase (major autolysin, vegetative)
Locus tag
BSU_09370
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bacillus subtilis subsp. subtilis str. 168 (strain: 168, sub-species: subtilis, type-material: type strain of Bacillus subtilis)
Lineage
Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus
Old locus tag
BSU09370
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Genomic context

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Sequence:
NC_000964.3 (1011792..1013258, complement)

NC_000964.3Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene NO-dependent activator of the ResDE regulon (Fe-S NO binding site) Neighboring gene putative integral membrane protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000964.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The major and minor wall teichoic acids prevent the sidewall localization of vegetative DL-endopeptidase LytF in Bacillus subtilis. Yamamoto H, et al. Mol Microbiol, 2008 Oct. PMID 18761696
  2. Solution structure of IseA, an inhibitor protein of DL-endopeptidases from Bacillus subtilis, reveals a novel fold with a characteristic inhibitory loop. Arai R, et al. J Biol Chem, 2012 Dec 28. PMID 23091053, Free PMC Article
  3. Bacillus subtilis, the model Gram-positive bacterium: 20 years of annotation refinement. Borriss R, et al. Microb Biotechnol, 2018 Jan. PMID 29280348, Free PMC Article
  4. An updated metabolic view of the Bacillus subtilis 168 genome. Belda E, et al. Microbiology (Reading), 2013 Apr. PMID 23429746
  5. From a consortium sequence to a unified sequence: the Bacillus subtilis 168 reference genome a decade later. Barbe V, et al. Microbiology (Reading), 2009 Jun. PMID 19383706, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. beta4-3(10) loop of IseA gets stuck deep in the cleft of LytF, and the active site is occluded.
    Title: Solution structure of IseA, an inhibitor protein of DL-endopeptidases from Bacillus subtilis, reveals a novel fold with a characteristic inhibitory loop.
  2. These results strongly suggest that wall teichoic acids inhibit the sidewall localization of LytF.
    Title: The major and minor wall teichoic acids prevent the sidewall localization of vegetative DL-endopeptidase LytF in Bacillus subtilis.
Submit: New GeneRIF Correction

General gene information

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Homology

General protein information

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Preferred Names
gamma-D-glutamate-meso-diaminopimelate muropeptidase (major autolysin, vegetative)
NP_388818.2
  • Evidence 1a: Function from experimental evidences in the studied strain; PubMedId: 10206711, 14594841, 18761694, 18761696, 23091053, 25288647; Product type e : enzyme

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000964.3 Reference assembly

    Range
    1011792..1013258 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_388818.2 gamma-D-glutamate-meso-diaminopimelate muropeptidase (major autolysin, vegetative) [Bacillus subtilis subsp. subtilis str. 168]

    See identical proteins and their annotated locations for NP_388818.2

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A0D1L7V5
    Conserved Domains (2) summary
    PRK06347
    Location:93 → 350
    PRK06347; 1,4-beta-N-acetylmuramoylhydrolase
    pfam00877
    Location:385 → 486
    NLPC_P60; NlpC/P60 family
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O07532.2

Gene LinkOut

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Other Literature Sources
Molecular Biology Databases