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pdaB polysaccharide deacetylase involved in sporulation [ Bacillus subtilis subsp. subtilis str. 168 ]

Gene ID: 938911, updated on 6-Jun-2024

Summary

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Gene symbol
pdaB
Gene description
polysaccharide deacetylase involved in sporulation
Locus tag
BSU_01570
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bacillus subtilis subsp. subtilis str. 168 (strain: 168, sub-species: subtilis, type-material: type strain of Bacillus subtilis)
Lineage
Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus
Old locus tag
BSU01570
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Genomic context

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Sequence:
NC_000964.3 (159779..160543, complement)

NC_000964.3Genomic Context describing neighboring genes Neighboring gene lipoprotein factor mediating clustering of germination proteins Neighboring gene inner membrane protein involved in activation of the KinB signaling pathway to sporulation Neighboring gene ribosomal RNA-16S Neighboring gene ribosomal RNA-23S

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000964.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization of a polysaccharide deacetylase gene homologue (pdaB) on sporulation of Bacillus subtilis. Fukushima T, et al. J Biochem, 2004 Sep. PMID 15598884
  2. Bacillus subtilis, the model Gram-positive bacterium: 20 years of annotation refinement. Borriss R, et al. Microb Biotechnol, 2018 Jan. PMID 29280348, Free PMC Article
  3. An updated metabolic view of the Bacillus subtilis 168 genome. Belda E, et al. Microbiology (Reading), 2013 Apr. PMID 23429746
  4. From a consortium sequence to a unified sequence: the Bacillus subtilis 168 reference genome a decade later. Barbe V, et al. Microbiology (Reading), 2009 Jun. PMID 19383706, Free PMC Article
  5. The complete genome sequence of the gram-positive bacterium Bacillus subtilis. Kunst F, et al. Nature, 1997 Nov 20. PMID 9384377

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. PdaB is necessary to maintain spores after the late stage of sporulation
    Title: Characterization of a polysaccharide deacetylase gene homologue (pdaB) on sporulation of Bacillus subtilis.
Submit: New GeneRIF Correction

General gene information

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Homology

General protein information

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Preferred Names
polysaccharide deacetylase involved in sporulation
NP_388038.1
  • Evidence 1a: Function from experimental evidences in the studied strain; PubMedId: 12662922, 15547282, 15598884; Product type cp: cell process

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000964.3 Reference assembly

    Range
    159779..160543 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_388038.1 polysaccharide deacetylase involved in sporulation [Bacillus subtilis subsp. subtilis str. 168]

    See identical proteins and their annotated locations for NP_388038.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    D4G4E9
    Conserved Domains (1) summary
    cd10949
    Location:54 → 245
    CE4_BsPdaB_like; Putative catalytic NodB homology domain of Bacillus subtilis putative polysaccharide deacetylase PdaB, and its bacterial homologs
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P50865.2

Gene LinkOut

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Other Literature Sources
Molecular Biology Databases
Research Materials