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CFAP107 cilia and flagella associated protein 107 [ Homo sapiens (human) ]

Gene ID: 93190, updated on 13-Aug-2022

Summary

Official Symbol
CFAP107provided by HGNC
Official Full Name
cilia and flagella associated protein 107provided by HGNC
Primary source
HGNC:HGNC:28567
See related
Ensembl:ENSG00000157330 AllianceGenome:HGNC:28567
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C1orf158
Expression
Restricted expression toward testis (RPKM 23.3) See more
Orthologs
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Genomic context

See CFAP107 in Genome Data Viewer
Location:
1p36.21
Exon count:
4
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (12746200..12763699)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (12290298..12307996)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (12806148..12823847)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene arylacetamide deacetylase like 3 Neighboring gene small nucleolar RNA U13 Neighboring gene PRAME family member 12 Neighboring gene PRAME family member 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC35194, DKFZp686C0236

Gene Ontology Provided by GOA

Component Evidence Code Pubs
located_in axonemal microtubule ISS
Inferred from Sequence or Structural Similarity
more info
 

General protein information

Preferred Names
cilia- and flagella-associated protein 107
Names
protein CFAP107
uncharacterized protein C1orf158

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001330361.2NP_001317290.1  cilia- and flagella-associated protein 107 isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an alternate in-frame exon compared to variant 1. The resulting isoform (2) has the same N- and C-termini but is shorter compared to isoform 1.
    Source sequence(s)
    AC244670
    Consensus CDS
    CCDS81264.1
    UniProtKB/TrEMBL
    Q5VUY5
    Related
    ENSP00000365383.3, ENST00000376210.3
  2. NM_152290.4NP_689503.3  cilia- and flagella-associated protein 107 isoform 1

    See identical proteins and their annotated locations for NP_689503.3

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    AC244670, BC029894, HY002971
    Consensus CDS
    CCDS147.1
    UniProtKB/Swiss-Prot
    Q5VUY4, Q8N1D5
    Related
    ENSP00000477802.1, ENST00000614859.5

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    12746200..12763699
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    12290298..12307996
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)