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LOC9318970 phosphoenolpyruvate carboxylase 3 [ Arabidopsis lyrata subsp. lyrata ]

Gene ID: 9318970, updated on 21-Dec-2023

Summary

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Gene symbol
LOC9318970
Gene description
phosphoenolpyruvate carboxylase 3
Locus tag
ARALYDRAFT_478917
Gene type
protein coding
RefSeq status
MODEL
Organism
Arabidopsis lyrata subsp. lyrata (sub-species: lyrata)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ATPPC3
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Genomic context

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Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
101 current v.1.0 (GCF_000004255.2) Unplaced Scaffold NW_003302553.1 (6234055..6238729)

NW_003302553.1Genomic Context describing neighboring genes Neighboring gene peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A Neighboring gene uroporphyrinogen decarboxylase 1, chloroplastic Neighboring gene TPR repeat-containing thioredoxin TTL2 Neighboring gene probable polyamine transporter At3g13620

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003302553 Unplaced Scaffold Reference v.1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphoenolpyruvate carboxylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbon fixation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in leaf development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in tricarboxylic acid cycle IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in apoplast IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in chloroplast IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
phosphoenolpyruvate carboxylase 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Arabidopsis lyrata subsp. lyrata Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference v.1.0 Primary Assembly

Genomic

  1. NW_003302553.1 Reference v.1.0 Primary Assembly

    Range
    6234055..6238729
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002882858.2 → XP_002882904.1  phosphoenolpyruvate carboxylase 3

    See identical proteins and their annotated locations for XP_002882904.1

    UniProtKB/TrEMBL
    D7L388
    Conserved Domains (2) summary
    COG2352
    Location:25 → 968
    Ppc; Phosphoenolpyruvate carboxylase [Energy production and conversion]
    pfam00311
    Location:164 → 968
    PEPcase; Phosphoenolpyruvate carboxylase
Nucleotide Protein
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