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LOC9314550 caffeoylshikimate esterase [ Arabidopsis lyrata subsp. lyrata ]

Gene ID: 9314550, updated on 21-Dec-2023

Summary

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Gene symbol
LOC9314550
Gene description
caffeoylshikimate esterase
Locus tag
ARALYDRAFT_667203
Gene type
protein coding
RefSeq status
MODEL
Organism
Arabidopsis lyrata subsp. lyrata (sub-species: lyrata)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
101 current v.1.0 (GCF_000004255.2) Unplaced Scaffold NW_003302551.1 (20942256..20945299, complement)

NW_003302551.1Genomic Context describing neighboring genes Neighboring gene UDP-glucuronic acid decarboxylase 2 Neighboring gene small nuclear ribonucleoprotein Sm D2 Neighboring gene uncharacterized LOC9314549 Neighboring gene 60S ribosomal protein L7a-2 Neighboring gene outer envelope pore protein 16-4, chloroplastic Neighboring gene pentatricopeptide repeat-containing protein At3g62890

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003302551 Unplaced Scaffold Reference v.1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables lipase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
caffeoylshikimate esterase
Names
predicted protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Arabidopsis lyrata subsp. lyrata Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference v.1.0 Primary Assembly

Genomic

  1. NW_003302551.1 Reference v.1.0 Primary Assembly

    Range
    20942256..20945299 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002878436.2 → XP_002878482.1  caffeoylshikimate esterase

    See identical proteins and their annotated locations for XP_002878482.1

    UniProtKB/TrEMBL
    D7LTA5
    Conserved Domains (2) summary
    pfam12146
    Location:30 → 274
    Hydrolase_4; Serine aminopeptidase, S33
    cl21494
    Location:9 → 291
    Abhydrolase; alpha/beta hydrolases
Nucleotide Protein
Heading Accession and Version

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