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LOC9310672 non-lysosomal glucosylceramidase [ Arabidopsis lyrata subsp. lyrata ]

Gene ID: 9310672, updated on 21-Dec-2023

Summary

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Gene symbol
LOC9310672
Gene description
non-lysosomal glucosylceramidase
Locus tag
ARALYDRAFT_327181
Gene type
protein coding
RefSeq status
MODEL
Organism
Arabidopsis lyrata subsp. lyrata (sub-species: lyrata)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: Un
Exon count:
21
Annotation release Status Assembly Chr Location
101 current v.1.0 (GCF_000004255.2) Unplaced Scaffold NW_003302550.1 (19958419..19964503)

NW_003302550.1Genomic Context describing neighboring genes Neighboring gene protein phosphatase methylesterase 1 Neighboring gene uncharacterized LOC110227824 Neighboring gene far upstream element-binding protein 1 Neighboring gene uncharacterized LOC9310673 Neighboring gene uncharacterized LOC110227715

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003302550 Unplaced Scaffold Reference v.1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-glucosidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables glucosylceramidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in glucosylceramide catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
non-lysosomal glucosylceramidase
Names
AT4g10060/T5L19_190

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Arabidopsis lyrata subsp. lyrata Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference v.1.0 Primary Assembly

Genomic

  1. NW_003302550.1 Reference v.1.0 Primary Assembly

    Range
    19958419..19964503
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002872442.2 → XP_002872488.1  non-lysosomal glucosylceramidase isoform X1

    See identical proteins and their annotated locations for XP_002872488.1

    UniProtKB/TrEMBL
    D7LY07
    Conserved Domains (2) summary
    pfam04685
    Location:493 → 855
    DUF608; Protein of unknown function, DUF608
    pfam12215
    Location:99 → 403
    GBA2_N; beta-Glucocerebrosidase 2 N terminal

  2. XM_021020960.1 → XP_020876619.1  non-lysosomal glucosylceramidase isoform X2

    Conserved Domains (2) summary
    pfam04685
    Location:492 → 852
    DUF608; Glycosyl-hydrolase family 116, catalytic region
    pfam12215
    Location:98 → 402
    Glyco_hydr_116N; beta-glucosidase 2, glycosyl-hydrolase family 116 N-term
Nucleotide Protein
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