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LOC9300360 indole glucosinolate O-methyltransferase 1 [ Arabidopsis lyrata subsp. lyrata ]

Gene ID: 9300360, updated on 25-Apr-2024

Summary

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Gene symbol
LOC9300360
Gene description
indole glucosinolate O-methyltransferase 1
Locus tag
ARALYDRAFT_684972
Gene type
protein coding
RefSeq status
MODEL
Organism
Arabidopsis lyrata subsp. lyrata (sub-species: lyrata)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
101 current v.1.0 (GCF_000004255.2) Unplaced Scaffold NW_003302548.1 (16082298..16084276, complement)

NW_003302548.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9300358 Neighboring gene nucleolar protein 58 Neighboring gene stress-induced protein KIN2 Neighboring gene pyruvate kinase 2, cytosolic

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003302548 Unplaced Scaffold Reference v.1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables O-methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables S-adenosylmethionine-dependent methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in methylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
indole glucosinolate O-methyltransferase 1
Names
predicted protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Arabidopsis lyrata subsp. lyrata Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference v.1.0 Primary Assembly

Genomic

  1. NW_003302548.1 Reference v.1.0 Primary Assembly

    Range
    16082298..16084276 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021015653.1 → XP_020871312.1  indole glucosinolate O-methyltransferase 1 isoform X1

    UniProtKB/TrEMBL
    D7MTK3
    Conserved Domains (2) summary
    pfam08100
    Location:44 → 97
    Dimerisation; Dimerisation domain
    cl17173
    Location:151 → 330
    AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...

  2. XM_021015654.1 → XP_020871313.1  indole glucosinolate O-methyltransferase 1 isoform X2

    Conserved Domains (1) summary
    cl17173
    Location:1 → 191
    AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...
Nucleotide Protein
Heading Accession and Version

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