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LOC9271949 alpha-amylase isozyme 3B [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 9271949, updated on 1-Aug-2024

Summary

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Gene symbol
LOC9271949
Gene description
alpha-amylase isozyme 3B
Locus tag
OSNPB_090457600
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
AMY3B; AMY1.6; RAmy3B; OsJ_29630
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
chromosome: 9
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (21678742..21680460)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (17296149..17297889)

Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene abscisic acid 8'-hydroxylase 3-like Neighboring gene alpha-amylase isozyme 3A-like Neighboring gene uncharacterized LOC4347264 Neighboring gene alpha-amylase isozyme 3C-like Neighboring gene ethylene-responsive transcription factor ERF109

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-amylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-amylase isozyme 3B
Names
1,4-alpha-D-glucan glucanohydrolase
Alpha-amylase isozyme 3B precursor (1,4-alpha-D-glucan glucanohydrolase)
B1045B05.10
LOC_Os09g28420
NP_001390734.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001403805.1 → NP_001390734.1  alpha-amylase isozyme 3B precursor

    Status: VALIDATED

    Source sequence(s)
    AK241191, AP014965, CF316342, CF316479, KT199371
    UniProtKB/Swiss-Prot
    A0A0N7KQX6, A3BZJ9, P27937, Q67U03
    UniProtKB/TrEMBL
    A0A1B0SZS0, A2Z214, A2Z215

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

    Range
    21678742..21680460
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P27937.1 GenPept UniProtKB/Swiss-Prot:P27937

Gene LinkOut

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Molecular Biology Databases
Research Materials