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LOC9269718 DNA topoisomerase 3-alpha [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 9269718, updated on 1-Aug-2024

Summary

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Gene symbol
LOC9269718
Gene description
DNA topoisomerase 3-alpha
Locus tag
OSNPB_030165000
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Broad expression in flower buds (RPKM 2.9), flowers (RPKM 2.9) and 6 other tissues See more
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Genomic context

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Location:
chromosome: 3
Exon count:
28
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (3496547..3509933, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (3488790..3500401, complement)

Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene protein FAR1-RELATED SEQUENCE 5 Neighboring gene probable fructokinase-4 Neighboring gene probable myosin-binding protein 4 Neighboring gene uncharacterized LOC107278303 Neighboring gene pentatricopeptide repeat-containing protein At5g01110 Neighboring gene protein CHROMATIN REMODELING 35

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA topoisomerase type I (single strand cut, ATP-independent) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA topological change IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA topoisomerase 3-alpha
Names
Os03g0164800
Os03g0165000

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

    Range
    3496547..3509933 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_066308866.1 → XP_066164963.1  DNA topoisomerase 3-alpha

    UniProtKB/Swiss-Prot
    C7J0A2, Q8S5U5
    UniProtKB/TrEMBL
    B8BDG8

  2. XM_015775779.3 → XP_015631265.1  DNA topoisomerase 3-alpha

    UniProtKB/Swiss-Prot
    C7J0A2, Q8S5U5
    UniProtKB/TrEMBL
    B8BDG8
    Conserved Domains (2) summary
    PRK07219
    Location:12 → 702
    PRK07219; DNA topoisomerase I; Validated
    pfam06839
    Location:806 → 847
    zf-GRF; GRF zinc finger

  3. XM_066308867.1 → XP_066164964.1  DNA topoisomerase 3-alpha

    UniProtKB/Swiss-Prot
    C7J0A2, Q8S5U5
    UniProtKB/TrEMBL
    B8BDG8

  4. XM_066308868.1 → XP_066164965.1  DNA topoisomerase 3-alpha

    UniProtKB/Swiss-Prot
    C7J0A2, Q8S5U5
    UniProtKB/TrEMBL
    B8BDG8
Nucleotide Protein
Heading Accession and Version

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