U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC9268632 nuclear poly(A) polymerase 4 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 9268632, updated on 1-Aug-2024

Summary

Go to the top of the page Help
Gene symbol
LOC9268632
Gene description
nuclear poly(A) polymerase 4
Locus tag
OSNPB_060558700
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in roots after flowering (RPKM 109.0), leaves before flowering (RPKM 85.5) and 6 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC9268632 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (22202079..22209100, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (21343396..21350357, complement)

Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene protein DETOXIFICATION 51 Neighboring gene verprolin-like Neighboring gene protein OXIDATIVE STRESS 3 Neighboring gene acid phosphatase 1 Neighboring gene uncharacterized LOC136356838

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables poly(A) RNA polymerase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
nuclear poly(A) polymerase 4
Names
OSJNBa0090E14.29
Os06g0558700
Os06g0558766
putative poly(A) polymerase

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

    Range
    22202079..22209100 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015787674.3 → XP_015643160.1  nuclear poly(A) polymerase 4 isoform X6

    UniProtKB/TrEMBL
    C7J4C8, Q5G7K1
    Conserved Domains (2) summary
    pfam04926
    Location:368 → 500
    PAP_RNA-bind; Poly(A) polymerase predicted RNA binding domain
    pfam04928
    Location:21 → 365
    PAP_central; Poly(A) polymerase central domain

  2. XM_015787671.3 → XP_015643157.1  nuclear poly(A) polymerase 4 isoform X6

    UniProtKB/TrEMBL
    C7J4C8, Q5G7K1
    Conserved Domains (2) summary
    pfam04926
    Location:368 → 500
    PAP_RNA-bind; Poly(A) polymerase predicted RNA binding domain
    pfam04928
    Location:21 → 365
    PAP_central; Poly(A) polymerase central domain

  3. XM_015787670.3 → XP_015643156.1  nuclear poly(A) polymerase 4 isoform X5

    UniProtKB/TrEMBL
    Q5G7K1
    Conserved Domains (2) summary
    pfam04926
    Location:368 → 500
    PAP_RNA-bind; Poly(A) polymerase predicted RNA binding domain
    pfam04928
    Location:21 → 365
    PAP_central; Poly(A) polymerase central domain

  4. XM_015787669.3 → XP_015643155.1  nuclear poly(A) polymerase 4 isoform X5

    UniProtKB/TrEMBL
    Q5G7K1
    Conserved Domains (2) summary
    pfam04926
    Location:368 → 500
    PAP_RNA-bind; Poly(A) polymerase predicted RNA binding domain
    pfam04928
    Location:21 → 365
    PAP_central; Poly(A) polymerase central domain

  5. XM_015787667.3 → XP_015643153.1  nuclear poly(A) polymerase 4 isoform X4

    UniProtKB/TrEMBL
    Q5G7K1
    Conserved Domains (3) summary
    PTZ00418
    Location:20 → 556
    PTZ00418; Poly(A) polymerase; Provisional
    pfam04926
    Location:368 → 500
    PAP_RNA-bind; Poly(A) polymerase predicted RNA binding domain
    pfam04928
    Location:21 → 365
    PAP_central; Poly(A) polymerase central domain

  6. XM_015787666.3 → XP_015643152.1  nuclear poly(A) polymerase 4 isoform X3

    UniProtKB/TrEMBL
    Q5G7K1, Q5Z7G3
    Conserved Domains (3) summary
    PTZ00418
    Location:20 → 556
    PTZ00418; Poly(A) polymerase; Provisional
    pfam04926
    Location:368 → 500
    PAP_RNA-bind; Poly(A) polymerase predicted RNA binding domain
    pfam04928
    Location:21 → 365
    PAP_central; Poly(A) polymerase central domain

  7. XM_015787665.3 → XP_015643151.1  nuclear poly(A) polymerase 4 isoform X2

    UniProtKB/TrEMBL
    Q5G7K1
    Conserved Domains (3) summary
    PTZ00418
    Location:20 → 556
    PTZ00418; Poly(A) polymerase; Provisional
    pfam04926
    Location:368 → 500
    PAP_RNA-bind; Poly(A) polymerase predicted RNA binding domain
    pfam04928
    Location:21 → 365
    PAP_central; Poly(A) polymerase central domain

  8. XM_066311344.1 → XP_066167441.1  nuclear poly(A) polymerase 4 isoform X1

    UniProtKB/TrEMBL
    Q5G7K1

  9. XM_066311346.1 → XP_066167443.1  nuclear poly(A) polymerase 4 isoform X5

    UniProtKB/TrEMBL
    Q5G7K1

RNA

  1. XR_001546760.3 RNA Sequence

  2. XR_001546759.3 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials