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LOC9268316 alpha-L-arabinofuranosidase 1 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 9268316, updated on 12-Jul-2024

Summary

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Gene symbol
LOC9268316
Gene description
alpha-L-arabinofuranosidase 1
Locus tag
OSNPB_110132000
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in roots after flowering (RPKM 5.8), leaves after flowering (RPKM 4.2) and 6 other tissues See more
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Genomic context

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Location:
chromosome: 11
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (1506674..1512043)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (1461093..1467658)

Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136354034 Neighboring gene alpha-L-arabinofuranosidase 1 Neighboring gene uncharacterized LOC4349685 Neighboring gene uncharacterized LOC136351170

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-L-arabinofuranosidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in L-arabinose metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-L-arabinofuranosidase 1
Names
Os11g0132000

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

    Range
    1506674..1512043
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_066305801.1 → XP_066161898.1  alpha-L-arabinofuranosidase 1 isoform X1

  2. XM_066305802.1 → XP_066161899.1  alpha-L-arabinofuranosidase 1 isoform X2

Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases
Research Materials