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LOC9268232 iron-phytosiderophore transporter YSL15-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 9268232, updated on 12-Jul-2024

Summary

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Gene symbol
LOC9268232
Gene description
iron-phytosiderophore transporter YSL15-like
Locus tag
OSNPB_020650300
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
YSL15; osysl15
Expression
Restricted expression toward roots before flowering (RPKM 21.5) See more
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Genomic context

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Location:
chromosome: 2
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (26686360..26691231, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (26200048..26204888, complement)

Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene metal-nicotianamine transporter YSL2-like Neighboring gene small nucleolar RNA Z247 Neighboring gene probable serine/threonine-protein kinase PBL19 Neighboring gene SNF2 domain-containing protein CLASSY 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Rice OsYSL15 is an iron-regulated iron(III)-deoxymugineic acid transporter expressed in the roots and is essential for iron uptake in early growth of the seedlings. Inoue H, et al. J Biol Chem, 2009 Feb 6. PMID 19049971
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables iron-nicotianamine transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables oligopeptide transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in response to iron ion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in seed development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
iron-phytosiderophore transporter YSL15
Names
LOC_Os02g43410
OSJNBb0012J10.10-1
P0048B08.34-1
Protein YELLOW STRIPE LIKE 15
iron(III)-deoxymugineic acid transporter
putative iron-phytosiderophore transporter protein yellow stripe 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001424249.1 → NP_001411178.1  iron-phytosiderophore transporter YSL15

    Status: VALIDATED

    Source sequence(s)
    AB190923, AP014958, AU032408, AU082716, CI259581
    UniProtKB/Swiss-Prot
    A0A0P0VMC8, Q0DZ37, Q6H3Z3
    UniProtKB/TrEMBL
    A2X7U6

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

    Range
    26686360..26691231 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6H3Z3.1 GenPept UniProtKB/Swiss-Prot:Q6H3Z3

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials