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ybaV competence-suppressing periplasmic helix-hairpin-helix DNA-binding protein [ Escherichia coli O157:H7 str. Sakai ]

Gene ID: 914598, updated on 4-Feb-2024

Summary

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Gene symbol
ybaV
Gene description
competence-suppressing periplasmic helix-hairpin-helix DNA-binding protein
Locus tag
ECs_0496
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli O157:H7 str. Sakai (strain: Sakai, substrain: RIMD 0509952, serovar: O157:H7)
Lineage
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
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Genomic context

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Sequence:
NC_002695.2 (529990..530361)

NC_002695.2Genomic Context describing neighboring genes Neighboring gene transcriptional regulator HU subunit beta Neighboring gene peptidyl-prolyl cis-trans isomerase D Neighboring gene long-chain acyl-CoA thioesterase III Neighboring gene 7-cyano-7-deazaguanine synthase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_002695.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparative analysis of the whole set of rRNA operons between an enterohemorrhagic Escherichia coli O157:H7 Sakai strain and an Escherichia coli K-12 strain MG1655. Ohnishi M, et al. Syst Appl Microbiol, 2000 Oct. PMID 11108008
  2. Complete nucleotide sequence of the prophage VT2-Sakai carrying the verotoxin 2 genes of the enterohemorrhagic Escherichia coli O157:H7 derived from the Sakai outbreak. Makino K, et al. Genes Genet Syst, 1999 Oct. PMID 10734605
  3. Complete nucleotide sequence of the prophage VT1-Sakai carrying the Shiga toxin 1 genes of the enterohemorrhagic Escherichia coli O157:H7 strain derived from the Sakai outbreak. Yokoyama K, et al. Gene, 2000 Nov 27. PMID 11111050
  4. Complete genome sequence of enterohemorrhagic Escherichia coli O157:H7 and genomic comparison with a laboratory strain K-12. Hayashi T, et al. DNA Res, 2001 Feb 28. PMID 11258796

GeneRIFs: Gene References Into Functions

General protein information

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Preferred Names
competence-suppressing periplasmic helix-hairpin-helix DNA-binding protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_002695.2 Reference assembly

    Range
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_308523.1 competence-suppressing periplasmic helix-hairpin-helix DNA-binding protein [Escherichia coli O157:H7 str. Sakai]

    See identical proteins and their annotated locations for NP_308523.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A7H9SA57
    Conserved Domains (1) summary
    TIGR00426
    Location:55 → 123
    TIGR00426; competence protein ComEA helix-hairpin-helix repeat region
Nucleotide Protein
Heading Accession and Version

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